PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G013400.1

Common Name

B456_013G013400, LOC105781936

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 375aa MW: 43264.4 Da PI: 7.8139

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G013400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	86.1	4.2e-27	104	188	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++qe+l+L+e+r +++ +++++++k+plW+e s+ m +e g++rs k+C+ek+enl+k+ykk+k+++ +r ++ +++++f+qle Gorai.013G013400.1 104 RWPRQETLTLLEIRIRLDPKFKEANQKGPLWDELSRIMaEEYGYQRSGKKCREKFENLHKYYKKTKQRKAGR--QDGKNYRFFRQLE 188 8***********************************7788************************97..66678****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.237	103	162	IPR017877	Myb-like domain
Pfam	PF13837	4.8E-19	103	188	No hit	No description
CDD	cd12203	1.50E-21	103	169	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MDMVDQNGLP HLRRSLPMRT HFPVPHPEPT EPYFAHINMA SPSPVPYHEP FMAPLPNRLV 60 RFSHNHYPSA SPTTGVAASA SIPSATTLFG GPRWGNITNG GNSRWPRQET LTLLEIRIRL 120 DPKFKEANQK GPLWDELSRI MAEEYGYQRS GKKCREKFEN LHKYYKKTKQ RKAGRQDGKN 180 YRFFRQLELL YGETTDQCPT VLYQTSNNPM NQRNHHEEEK KPSDQSLGVS NSSEFETSSS 240 ENNADNEVSA FTKVKDFMES QMNKLIDSQD VWMERMLKAI EDKDQERLSK EEEWRRQETA 300 LLDKEHEIWV KERAWVEARD FALMEVVKNF TRKRVLEVSS SSSSAERPVG YTQQGISSLI 360 HSLGQAWNQD SSNI*

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MDMVDQNGLP HLRRSLPMRT HFPVPHPEPT EPYFAHINMA SPSPVPYHEP FMAPLPNRLV  60
RFSHNHYPSA SPTTGVAASA SIPSATTLFG GPRWGNITNG GNSRWPRQET LTLLEIRIRL  120
DPKFKEANQK GPLWDELSRI MAEEYGYQRS GKKCREKFEN LHKYYKKTKQ RKAGRQDGKN  180
YRFFRQLELL YGETTDQCPT VLYQTSNNPM NQRNHHEEEK KPSDQSLGVS NSSEFETSSS  240
ENNADNEVSA FTKVKDFMES QMNKLIDSQD VWMERMLKAI EDKDQERLSK EEEWRRQETA  300
LLDKEHEIWV KERAWVEARD FALMEVVKNF TRKRVLEVSS SSSSAERPVG YTQQGISSLI  360
HSLGQAWNQD SSNI*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: First observed in the early-developing flower, in four zones between the initiating sepals and in their developing margins. Later detected in the margins of expanding sepals, petals and stamens, and in the leaf margins. {ECO:0000269\|PubMed:15269176}.
Uniprot	TISSUE SPECIFICITY: Confined to flowers, at low levels. Also present in 7-days-old seedlings. Barely detectable in other tissues such as young seedlings, roots, stems, leaves and siliques (PubMed:15269176). Expressed in flower primordia, more precisely between newly arisen sepal primordia and also at the basal margins of developing sepals (PubMed:25697797). {ECO:0000269\|PubMed:15269176, ECO:0000269\|PubMed:25697797}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269\|PubMed:10572040, ECO:0000269\|PubMed:15269176, ECO:0000269\|PubMed:18080804}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269\|PubMed:15269176}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012461910.1	0.0	PREDICTED: trihelix transcription factor PTL-like
Swissprot	Q9LZS0	2e-79	PTL_ARATH; Trihelix transcription factor PTL
TrEMBL	A0A0D2W1S0	0.0	A0A0D2W1S0_GOSRA; Uncharacterized protein
STRING	Gorai.013G013400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24291	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	2e-77	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Gorai.013G013400.1
Entrez Gene	105781936

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Quon T,Lampugnani ER,Smyth DR PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 152 [PMID:28228771]