PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.013G005900.1 | ||||||||
Common Name | B456_013G005900, LOC105784364 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 213aa MW: 23624 Da PI: 8.2884 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 134.8 | 3.2e-42 | 48 | 147 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da+sslvyeA++r+rdPvyG++g i++lqqq+++l+ Gorai.013G005900.1 48 PCAACKLLRRRCAEECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPENQRADAASSLVYEANVRLRDPVYGCMGAISALQQQVQSLQ 138 7****************************************************************************************** PP DUF260 92 aelallkee 100 ae++++++e Gorai.013G005900.1 139 AEINAVRAE 147 ****99987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.586 | 47 | 148 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.6E-42 | 48 | 145 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 213 aa Download sequence Send to blast |
MSRERERFYE IGKKIKREAD VVSFGGHHHQ MGRRHMMGCH GTLNTITPCA ACKLLRRRCA 60 EECPFSPYFS PHEPQKFASV HKVFGASNVS KMLMEVPENQ RADAASSLVY EANVRLRDPV 120 YGCMGAISAL QQQVQSLQAE INAVRAEIMK HKCREANLIP SSSHLALLSS GAVSIATPPP 180 MPLPQPTTAA DYNTISDENV TYTLDNKYYL DN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-47 | 48 | 162 | 11 | 125 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-47 | 48 | 162 | 11 | 125 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012465673.1 | 1e-160 | PREDICTED: LOB domain-containing protein 15-like | ||||
Swissprot | Q8L5T5 | 4e-81 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | A0A0D2S650 | 1e-158 | A0A0D2S650_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G005900.1 | 1e-159 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1927 | 27 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40470.1 | 5e-74 | LOB domain-containing protein 15 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.013G005900.1 |
Entrez Gene | 105784364 |
Publications ? help Back to Top | |||
---|---|---|---|
|