PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G004400.2

Common Name

B456_013G004400

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 326aa MW: 36541.9 Da PI: 8.3804

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G004400.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.9	6.1e-10	131	171	5	45
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L Gorai.013G004400.2 131 KILRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 171 6679************************9777777666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-7	127	190	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.289	129	173	IPR004827	Basic-leucine zipper domain
CDD	cd14708	1.13E-25	131	183	No hit	No description
Pfam	PF00170	6.1E-7	131	171	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.44E-7	131	174	No hit	No description
Gene3D	G3DSA:1.20.5.170	9.5E-8	133	176	No hit	No description
PROSITE pattern	PS00036	0	134	149	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.2E-31	213	285	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MANLYLGFTC GNADSAFNSA KASGQPFPTD RSYIGTLDKT PNSFTINPSA LRVESQGLHL 60 ERGQQTGPVS ISRGHTENWG ESDMADASPR TDISTDAETD EKNLRFDSEK LNAAVAASDS 120 SDRSKSNLDQ KILRRLAQNR EAARKSRLRK KAYVQQLESS RLKLTQLEQE LQRARQQGIF 180 ISSSGDQSHS LGGNGAMTFD VEYGRWLEEH NRQINELRMA VNSHAGDAEL RIIVDGVMAH 240 YDEIFRLKSN VAKADVFHLL SGMWKTPAER CFLWLGGFRS SELLKSNSWW ELATCNNLPS 300 RLKMHYHKVW KHCSSLCPRH CPLDP*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed primarily in roots of young seedlings and later expressed in aging cotyledons, mesophyll cells of hydathodes on leaf margins, vascular tissue and trichomes of senescing rosette leaves. Also detected in young lateral roots and in mature pollen grains.
Uniprot	TISSUE SPECIFICITY: Expressed predominantly in roots and flowers.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012463061.1	0.0	PREDICTED: transcription factor TGA2-like isoform X1
Refseq	XP_012463062.1	0.0	PREDICTED: transcription factor TGA2-like isoform X1
Refseq	XP_012463063.1	0.0	PREDICTED: transcription factor TGA2-like isoform X1
Refseq	XP_012463064.1	0.0	PREDICTED: transcription factor TGA2-like isoform X1
Refseq	XP_012463065.1	0.0	PREDICTED: transcription factor TGA2-like isoform X1
Swissprot	Q39140	1e-113	TGA6_ARATH; Transcription factor TGA6
TrEMBL	A0A0D2V8W0	0.0	A0A0D2V8W0_GOSRA; Uncharacterized protein
STRING	Gorai.013G004400.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12250.2	1e-96	TGACG motif-binding factor 6

Link Out ? help Back to Top
Phytozome	Gorai.013G004400.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]