PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G001700.2

Common Name

B456_013G001700, LOC105782814

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 333aa MW: 37151.8 Da PI: 9.8646

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G001700.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.9	5.9e-10	45	86	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L Gorai.013G001700.2 45 QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 86 6889*************************9777777666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	6.2E-8	36	89	No hit	No description
SMART	SM00338	4.6E-9	42	105	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.415	44	88	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.9E-7	46	86	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.44E-7	46	89	No hit	No description
PROSITE pattern	PS00036	0	49	64	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.1E-31	129	203	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MADASPRTDT STDDTDEKNQ RFGRGQMNAI VASDSSDRSK DKTDQKTLRR LAQNREAARK 60 SRLRKKAYVQ QLESSRLKLT QLEQELQRAR QQGIFISSSG DQSHSMSGNG ALAFDVEYAR 120 WLEEHNRKIN ELRTAVNSHA GDAELRIIVD SVTTHFDDIF RLKGTAAKAD VFHILSGMWK 180 TPAERCFLWI GGFRSSELLK LLANQLEPLT EQQFMGIQKL QQSSQQAEDS LSQGMEALQQ 240 SLAETLANGS PSAPSGSSGN VANYMGQMAM AMGKLGTLEG FLLQADNLRQ QTLQQMHRIL 300 TTRQSARALL AINDYFSRLR ALSSLWLARP RE*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.853	0.0	seedling

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	48747402	0.0

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012463268.1	0.0	PREDICTED: transcription factor HBP-1b(c38)-like
Refseq	XP_012463269.1	0.0	PREDICTED: transcription factor HBP-1b(c38)-like
Refseq	XP_012463270.1	0.0	PREDICTED: transcription factor HBP-1b(c38)-like
Refseq	XP_012463272.1	0.0	PREDICTED: transcription factor HBP-1b(c38)-like
Refseq	XP_016723656.1	0.0	PREDICTED: transcription factor HBP-1b(c38)-like
Refseq	XP_016723657.1	0.0	PREDICTED: transcription factor HBP-1b(c38)-like
Refseq	XP_016723658.1	0.0	PREDICTED: transcription factor HBP-1b(c38)-like
Swissprot	Q41558	0.0	HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBL	A0A0D2V7F4	0.0	A0A0D2V7F4_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8M9Y7	0.0	A0A1U8M9Y7_GOSHI; transcription factor HBP-1b(C38)-like
STRING	Gorai.007G352600.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06950.4	1e-134	bZIP family protein

Link Out ? help Back to Top
Phytozome	Gorai.013G001700.2
Entrez Gene	105782814

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]