PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G187000.1

Common Name

B456_012G187000, LOC105780775

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 347aa MW: 38720.9 Da PI: 9.5179

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G187000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.2	8e-33	25	79	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LH+rFveav+qLGG++kAtPk+++++m++ gLtl+h+kSHLQkYRl Gorai.012G187000.1 25 KPRLKWTPQLHQRFVEAVNQLGGADKATPKSLMRIMGISGLTLYHLKSHLQKYRL 79 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.849	22	82	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.2E-31	23	79	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.33E-16	24	79	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-23	25	80	IPR006447	Myb domain, plants
Pfam	PF00249	2.1E-8	27	78	IPR001005	SANT/Myb domain
Pfam	PF14379	4.0E-20	119	165	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MSLLHNNIKN MGHQNMNLVL STDTKPRLKW TPQLHQRFVE AVNQLGGADK ATPKSLMRIM 60 GISGLTLYHL KSHLQKYRLG KFQQTEICHS NKLDDYKEIR SNNGNFSDGT HNQMNESLQI 120 AQALQMQMEV QRKLHEQIMV QRHLQLRIEA QGKYLQLVLK KAQETLVGYS SSSVGVGLAK 180 AELSRLGSMV NTGCTSSLFS ELTKIGDSNL KEIERSPIRG TMSSMESSLT ASESCRRKDV 240 EPPQDENICT QKSSTSAELS LMDVHTEKKP LISGSSNQAN GKKRSGSDFS DGILVEQPLA 300 KRLEFPGEET GYRLRKSGLL RSFDLNSQRH NDTESASKAV DLNCRE*

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MSLLHNNIKN MGHQNMNLVL STDTKPRLKW TPQLHQRFVE AVNQLGGADK ATPKSLMRIM  60
GISGLTLYHL KSHLQKYRLG KFQQTEICHS NKLDDYKEIR SNNGNFSDGT HNQMNESLQI  120
AQALQMQMEV QRKLHEQIMV QRHLQLRIEA QGKYLQLVLK KAQETLVGYS SSSVGVGLAK  180
AELSRLGSMV NTGCTSSLFS ELTKIGDSNL KEIERSPIRG TMSSMESSLT ASESCRRKDV  240
EPPQDENICT QKSSTSAELS LMDVHTEKKP LISGSSNQAN GKKRSGSDFS DGILVEQPLA  300
KRLEFPGEET GYRLRKSGLL RSFDLNSQRH NDTESASKAV DLNCRE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-21	25	83	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-21	25	83	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-21	25	83	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-21	25	83	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-21	25	83	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-21	25	83	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-21	25	83	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-21	25	83	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX614276	2e-56	JX614276.1 Gossypium hirsutum clone NBRI_GE57551 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012460723.1	0.0	PREDICTED: uncharacterized protein LOC105780775
Swissprot	F4I274	2e-78	PHL8_ARATH; Myb family transcription factor PHL8
TrEMBL	A0A0D2W0T1	0.0	A0A0D2W0T1_GOSRA; Uncharacterized protein
STRING	Gorai.012G187000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3878	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.1	2e-73	G2-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.012G187000.1
Entrez Gene	105780775

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]