PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.012G186900.2 | ||||||||
Common Name | B456_012G186900, LOC105780776 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Dof | ||||||||
Protein Properties | Length: 231aa MW: 26006.2 Da PI: 10.013 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.2 | 9e-39 | 47 | 107 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s+ tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrk k+ss Gorai.012G186900.2 47 PDKMLPCPRCNSKATKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKTKASS 107 7899*****************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 6.0E-29 | 38 | 104 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.5E-31 | 49 | 105 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.341 | 51 | 105 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 53 | 89 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MENGFHKDKH EKTRSEDIKD DSEASSLRSS KNGETTCSQQ DKTMKKPDKM LPCPRCNSKA 60 TKFCYFNNYN VNQPRHFCKN CQRYWTAGGT MRNVPVGAGR RKTKASSSLH FNHQWFPSKV 120 ACFSRPFPWD VPMASYNIPV SPTVLGKHSR DEPNMDSTTL RIIDDDGETN KSSLLATPIM 180 KTKNTNSGGL FNGLQAKGND ERNYRSVETF SVLRANPAAL SRSLNFHEKT * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012460726.1 | 1e-174 | PREDICTED: cyclic dof factor 1-like | ||||
TrEMBL | A0A0D2TRS9 | 1e-173 | A0A0D2TRS9_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A0D2V845 | 1e-173 | A0A0D2V845_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.012G186900.1 | 1e-174 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62430.1 | 4e-48 | cycling DOF factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.012G186900.2 |
Entrez Gene | 105780776 |
Publications ? help Back to Top | |||
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