PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G186900.1

Common Name

B456_012G186900, LOC105780776

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 285aa MW: 31796.7 Da PI: 8.8444

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G186900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.6	1.3e-38	101	161	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s+ tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrk k+ss Gorai.012G186900.1 101 PDKMLPCPRCNSKATKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKTKASS 161 7899*****************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-29	92	158	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.0E-31	103	159	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.341	105	159	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	107	143	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MSNDHSCAAI KLFGKMIPLL PLNQDEALAA RDDCCDTNLH SSSISLASMV DQESMENGFH 60 KDKHEKTRSE DIKDDSEASS LRSSKNGETT CSQQDKTMKK PDKMLPCPRC NSKATKFCYF 120 NNYNVNQPRH FCKNCQRYWT AGGTMRNVPV GAGRRKTKAS SSLHFNHQWF PSKVACFSRP 180 FPWDVPMASY NIPVSPTVLG KHSRDEPNMD STTLRIIDDD GETNKSSLLA TPIMKTKNTN 240 SGGLFNGLQA KGNDERNYRS VETFSVLRAN PAALSRSLNF HEKT*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the vascular tissues of cotyledons, leaves and hypocotyls and in stomata. Not detected in roots. {ECO:0000269\|PubMed:16002617}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. A flanking TGT sequence contributes to the specificity of binding. Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The DNA-binding ability is not modulated by 'GIGANTEA' but the stability of CDF1 is controlled by the proteasome-dependent pathway. Ubiquitinated by the SCF(ADO3) E3 ubiquitin ligase complex. Binds to the FT promoter in the morning. {ECO:0000269\|PubMed:16002617, ECO:0000269\|PubMed:19619493, ECO:0000269\|PubMed:22628657}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation at the protein level, but not at the mRNA level. Strongly decreased expression during the dark phase. Accumulates at high levels at the beginning of the day. {ECO:0000269\|PubMed:16002617}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012460726.1	0.0	PREDICTED: cyclic dof factor 1-like
Swissprot	Q8W1E3	2e-45	CDF1_ARATH; Cyclic dof factor 1
TrEMBL	A0A0D2TRS9	0.0	A0A0D2TRS9_GOSRA; Uncharacterized protein
STRING	Gorai.012G186900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18962	3	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62430.1	7e-48	cycling DOF factor 1

Link Out ? help Back to Top
Phytozome	Gorai.012G186900.1
Entrez Gene	105780776

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Seaton DD, et al. Linked circadian outputs control elongation growth and flowering in response to photoperiod and temperature. Mol. Syst. Biol., 2015. 11(1): p. 776 [PMID:25600997] Goralogia GS, et al. CYCLING DOF FACTOR 1 represses transcription through the TOPLESS co-repressor to control photoperiodic flowering in Arabidopsis. Plant J., 2017. 92(2): p. 244-262 [PMID:28752516] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]