PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G185900.1

Common Name

B456_012G185900

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 161aa MW: 17375.4 Da PI: 8.8604

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G185900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	67.5	3e-21	43	90	1	48
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllka 48 +CaaCk+lrr+Ca++Cvlapyfp ++p+kfa++h++FGasn++k+l+ Gorai.012G185900.1 43 PCAACKILRRRCADKCVLAPYFPPTEPAKFAIAHRVFGASNIIKFLQV 90 7********************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	14.046	42	147	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.0E-20	43	91	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MEYSEPIPTP TISSSPSLSP NSSISSNSPP SPPLSSPLVV ISPCAACKIL RRRCADKCVL 60 APYFPPTEPA KFAIAHRVFG ASNIIKFLQV VLWSFLQLNN IPCHVLSLLE MIIRLILSAT 120 VPTAQFSPPL LLISPAENQL TSVVKKKLHC TDSLNQTTQQ *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-17	42	88	10	56	LOB family transfactor Ramosa2.1
5ly0_B	7e-17	42	88	10	56	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX616907	2e-48	JX616907.1 Gossypium hirsutum clone NBRI_GE61864 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012462233.1	3e-35	PREDICTED: LOB domain-containing protein 1-like
TrEMBL	A0A0D2W0R8	1e-108	A0A0D2W0R8_GOSRA; Uncharacterized protein
STRING	Gorai.012G185900.1	1e-109	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20654	4	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	2e-28	LOB domain-containing protein 11

Link Out ? help Back to Top
Phytozome	Gorai.012G185900.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]