PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G185600.1
Common NameB456_012G185600, LOC105779850
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 240aa    MW: 27679.6 Da    PI: 7.502
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G185600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.11.7e-31959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krienk+nrqvtf+kRrng+lKKA+ELS+LCdaeva+iifs++gklye+ss
  Gorai.012G185600.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIIFSNRGKLYEFSS 59
                        79***********************************************96 PP
2K-box89.94.6e-30821739100
               K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                         ++e ++++ +qe+ kLk++++ Lq++qRh+lGedL++L  +eL+qLe+qL+ slkkiRs K+e ++eq+++l +ke++l e+n++Lr+kl+
  Gorai.012G185600.1  82 QTEIETQRNYQEYLKLKAKVQVLQHSQRHFLGEDLGDLGSEELEQLEHQLDFSLKKIRSLKMERMVEQLSKLERKEEMLLETNRNLRRKLD 172
                         567889***********************************************************************************98 PP

               K-box 100 e 100
                         e
  Gorai.012G185600.1 173 E 173
                         6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.824161IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-41160IPR002100Transcription factor, MADS-box
CDDcd002654.94E-43278No hitNo description
SuperFamilySSF554553.01E-33287IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-33323IPR002100Transcription factor, MADS-box
PfamPF003192.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-333859IPR002100Transcription factor, MADS-box
PfamPF014863.4E-2586171IPR002487Transcription factor, K-box
PROSITE profilePS5129714.95287177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSILCD AEVALIIFSN RGKLYEFSSS  60
NSIADILERY NRCTYGALEP GQTEIETQRN YQEYLKLKAK VQVLQHSQRH FLGEDLGDLG  120
SEELEQLEHQ LDFSLKKIRS LKMERMVEQL SKLERKEEML LETNRNLRRK LDENASALRS  180
TWETGEQSVP CNLQHPRFLE PLQCTTSMQI SYNVPADLTH ENIATTTSAP SGFIPDWML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-22751711101Developmental protein SEPALLATA 3
4ox0_B2e-22751711101Developmental protein SEPALLATA 3
4ox0_C2e-22751711101Developmental protein SEPALLATA 3
4ox0_D2e-22751711101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable MADS-box transcription factor that functions with J2 and EJ2 in meristem maturation. {ECO:0000269|PubMed:28528644}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ4098680.0FJ409868.1 Gossypium hirsutum MADS-11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012459256.11e-178PREDICTED: MADS-box protein CMB1-like
SwissprotK4BND81e-96MADS4_SOLLC; MADS-box protein 04g005320
TrEMBLA0A0D2V6W91e-177A0A0D2V6W9_GOSRA; Uncharacterized protein
STRINGGorai.012G185600.11e-178(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2452134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.24e-81MIKC_MADS family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Soyk S, et al.
    Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene.
    Cell, 2017. 169(6): p. 1142-1155.e12
    [PMID:28528644]