PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G176500.4
Common NameB456_012G176500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SBP
Protein Properties Length: 299aa    MW: 32648.7 Da    PI: 7.7126
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G176500.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.23.5e-41188265178
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         +CqvegC+ dls+a++yhr+hkvCe hsk+p+v+vsgle+rfCqqCsrfh+lsefD +krsCr+rL++hn+rrrk+q+
  Gorai.012G176500.4 188 RCQVEGCNLDLSSARDYHRKHKVCESHSKSPKVIVSGLERRFCQQCSRFHALSEFDVNKRSCRQRLSDHNARRRKPQT 265
                         6**************************************************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.1E-32183250IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.069186263IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.04E-39187268IPR004333Transcription factor, SBP-box
PfamPF031107.5E-32189262IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MSFISLMEWN EQTPLQWDWE NLMLNATPTE IPRRLRPVEW DIDEGEGGLD SVSLNSSSVA  60
GGSGGSGSDL GLASLSKNLK SASIDSLSMG EAKLTKFTLD AYEAIPDDIS NKKEVSGIET  120
TSTSLTLVAS VGSGEPLLSL KLGKQTYSED VSTGTNATDS SYSATLSSSS PLSAKRSKLN  180
CRSTHVVRCQ VEGCNLDLSS ARDYHRKHKV CESHSKSPKV IVSGLERRFC QQCSRFHALS  240
EFDVNKRSCR QRLSDHNARR RKPQTEATHF NAARISSSYG TILNLTLIVF CCMILLRE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-271892621184squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively during plant development, weak increase during flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157 (Probable). Up-regulated by Turnip mosaic virus P1/HC-Pro protein, that acts as an antagonist of miR156. {ECO:0000269|PubMed:12202040, ECO:0000269|PubMed:12586064, ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6223190.0KJ622319.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458624.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_012458626.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_012458627.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_012458628.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_012458629.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_012458630.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_012458631.10.0PREDICTED: squamosa promoter-binding-like protein 2
SwissprotQ9S8402e-71SPL2_ARATH; Squamosa promoter-binding-like protein 2
TrEMBLA0A0D2W0F90.0A0A0D2W0F9_GOSRA; Uncharacterized protein
STRINGGorai.012G176500.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.31e-58squamosa promoter binding protein-like 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]