PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.012G176500.4 | ||||||||
Common Name | B456_012G176500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | SBP | ||||||||
Protein Properties | Length: 299aa MW: 32648.7 Da PI: 7.7126 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 131.2 | 3.5e-41 | 188 | 265 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+ dls+a++yhr+hkvCe hsk+p+v+vsgle+rfCqqCsrfh+lsefD +krsCr+rL++hn+rrrk+q+ Gorai.012G176500.4 188 RCQVEGCNLDLSSARDYHRKHKVCESHSKSPKVIVSGLERRFCQQCSRFHALSEFDVNKRSCRQRLSDHNARRRKPQT 265 6**************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.1E-32 | 183 | 250 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.069 | 186 | 263 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 8.04E-39 | 187 | 268 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 7.5E-32 | 189 | 262 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MSFISLMEWN EQTPLQWDWE NLMLNATPTE IPRRLRPVEW DIDEGEGGLD SVSLNSSSVA 60 GGSGGSGSDL GLASLSKNLK SASIDSLSMG EAKLTKFTLD AYEAIPDDIS NKKEVSGIET 120 TSTSLTLVAS VGSGEPLLSL KLGKQTYSED VSTGTNATDS SYSATLSSSS PLSAKRSKLN 180 CRSTHVVRCQ VEGCNLDLSS ARDYHRKHKV CESHSKSPKV IVSGLERRFC QQCSRFHALS 240 EFDVNKRSCR QRLSDHNARR RKPQTEATHF NAARISSSYG TILNLTLIVF CCMILLRE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-27 | 189 | 262 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed constitutively during plant development, weak increase during flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157 (Probable). Up-regulated by Turnip mosaic virus P1/HC-Pro protein, that acts as an antagonist of miR156. {ECO:0000269|PubMed:12202040, ECO:0000269|PubMed:12586064, ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ622319 | 0.0 | KJ622319.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL11) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012458624.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 2 | ||||
Refseq | XP_012458626.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 2 | ||||
Refseq | XP_012458627.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 2 | ||||
Refseq | XP_012458628.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 2 | ||||
Refseq | XP_012458629.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 2 | ||||
Refseq | XP_012458630.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 2 | ||||
Refseq | XP_012458631.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 2 | ||||
Swissprot | Q9S840 | 2e-71 | SPL2_ARATH; Squamosa promoter-binding-like protein 2 | ||||
TrEMBL | A0A0D2W0F9 | 0.0 | A0A0D2W0F9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.012G176500.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 1e-58 | squamosa promoter binding protein-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.012G176500.4 |
Publications ? help Back to Top | |||
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