PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.012G176500.2 | ||||||||
Common Name | B456_012G176500, LOC105779428 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | SBP | ||||||||
Protein Properties | Length: 479aa MW: 52794.9 Da PI: 7.0211 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.1 | 7.7e-41 | 188 | 265 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+ dls+a++yhr+hkvCe hsk+p+v+vsgle+rfCqqCsrfh+lsefD +krsCr+rL++hn+rrrk+q+ Gorai.012G176500.2 188 RCQVEGCNLDLSSARDYHRKHKVCESHSKSPKVIVSGLERRFCQQCSRFHALSEFDVNKRSCRQRLSDHNARRRKPQT 265 6**************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.6E-32 | 183 | 250 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.069 | 186 | 263 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.86E-38 | 187 | 268 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.6E-31 | 189 | 262 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 479 aa Download sequence Send to blast |
MSFISLMEWN EQTPLQWDWE NLMLNATPTE IPRRLRPVEW DIDEGEGGLD SVSLNSSSVA 60 GGSGGSGSDL GLASLSKNLK SASIDSLSMG EAKLTKFTLD AYEAIPDDIS NKKEVSGIET 120 TSTSLTLVAS VGSGEPLLSL KLGKQTYSED VSTGTNATDS SYSATLSSSS PLSAKRSKLN 180 CRSTHVVRCQ VEGCNLDLSS ARDYHRKHKV CESHSKSPKV IVSGLERRFC QQCSRFHALS 240 EFDVNKRSCR QRLSDHNARR RKPQTEATHF NAARISSSYD GKQHTSFVWN EVPILHNARP 300 NKKFAMEGTF YSKSSRMTSY MPMKLGNINE QVQLPINQLS NPIMMRCNDF NKFLPSKGKQ 360 NTAEVLDGGV EQSMVASSTG TAQELHRALS LLSNDSQVSS EPKHGSLTYP IMHVDPTSTS 420 QPAMNAIPQG FQHALPENWQ IGQEEETTTE SRMHTSDVDN RFREFLLVKA PYDGGFYS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-27 | 189 | 262 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ622319 | 0.0 | KJ622319.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL11) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012458624.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 2 | ||||
Refseq | XP_012458626.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 2 | ||||
Refseq | XP_012458627.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 2 | ||||
Refseq | XP_012458628.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 2 | ||||
Refseq | XP_012458629.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 2 | ||||
Refseq | XP_012458630.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 2 | ||||
Refseq | XP_012458631.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 2 | ||||
TrEMBL | A0A0D2TRB8 | 0.0 | A0A0D2TRB8_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.012G176500.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 1e-66 | squamosa promoter binding protein-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.012G176500.2 |
Entrez Gene | 105779428 |
Publications ? help Back to Top | |||
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