PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G176500.2
Common NameB456_012G176500, LOC105779428
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SBP
Protein Properties Length: 479aa    MW: 52794.9 Da    PI: 7.0211
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G176500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.17.7e-41188265178
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         +CqvegC+ dls+a++yhr+hkvCe hsk+p+v+vsgle+rfCqqCsrfh+lsefD +krsCr+rL++hn+rrrk+q+
  Gorai.012G176500.2 188 RCQVEGCNLDLSSARDYHRKHKVCESHSKSPKVIVSGLERRFCQQCSRFHALSEFDVNKRSCRQRLSDHNARRRKPQT 265
                         6**************************************************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.6E-32183250IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.069186263IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.86E-38187268IPR004333Transcription factor, SBP-box
PfamPF031101.6E-31189262IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MSFISLMEWN EQTPLQWDWE NLMLNATPTE IPRRLRPVEW DIDEGEGGLD SVSLNSSSVA  60
GGSGGSGSDL GLASLSKNLK SASIDSLSMG EAKLTKFTLD AYEAIPDDIS NKKEVSGIET  120
TSTSLTLVAS VGSGEPLLSL KLGKQTYSED VSTGTNATDS SYSATLSSSS PLSAKRSKLN  180
CRSTHVVRCQ VEGCNLDLSS ARDYHRKHKV CESHSKSPKV IVSGLERRFC QQCSRFHALS  240
EFDVNKRSCR QRLSDHNARR RKPQTEATHF NAARISSSYD GKQHTSFVWN EVPILHNARP  300
NKKFAMEGTF YSKSSRMTSY MPMKLGNINE QVQLPINQLS NPIMMRCNDF NKFLPSKGKQ  360
NTAEVLDGGV EQSMVASSTG TAQELHRALS LLSNDSQVSS EPKHGSLTYP IMHVDPTSTS  420
QPAMNAIPQG FQHALPENWQ IGQEEETTTE SRMHTSDVDN RFREFLLVKA PYDGGFYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-271892621184squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6223190.0KJ622319.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458624.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_012458626.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_012458627.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_012458628.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_012458629.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_012458630.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_012458631.10.0PREDICTED: squamosa promoter-binding-like protein 2
TrEMBLA0A0D2TRB80.0A0A0D2TRB8_GOSRA; Uncharacterized protein
STRINGGorai.012G176500.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.31e-66squamosa promoter binding protein-like 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]