PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.012G169000.1 | ||||||||
Common Name | B456_012G169000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 270aa MW: 29062.1 Da PI: 5.5891 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33.4 | 8e-11 | 4 | 91 | 3 | 90 |
EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS.-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesg.rsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 k++++ d + +rl +p k + + g + ++++ + g + W +++++ +++ ++ vl+ GW++Fv +n+Lk+gD+++ + d + + Gorai.012G169000.1 4 KKFKTTDIN--KRLAIPGKILPSLpafnG-----GHAVMIQLKYGiNIWPIYCTVrENGYKKPVLSVGWRKFVADNKLKTGDIITMYKDFEdE 89 556444444..458888888877754322.....33567677777899*****8855555669**********************99653335 PP EE CS B3 89 ef 90 ++ Gorai.012G169000.1 90 DG 91 54 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.7E-11 | 1 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.37E-15 | 1 | 101 | No hit | No description |
SuperFamily | SSF101936 | 7.46E-10 | 2 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 5.8E-4 | 2 | 98 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.5E-8 | 11 | 91 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.841 | 45 | 103 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MFSKKFKTTD INKRLAIPGK ILPSLPAFNG GHAVMIQLKY GINIWPIYCT VRENGYKKPV 60 LSVGWRKFVA DNKLKTGDII TMYKDFEDED GGSHFRVEVE KPPAASKQDR SHGTLPSSSV 120 IAFNDHEVHG TNSGNEADRI PNKALDDGAI NLEGGIPIME LPDVATDTLV DGHVIAKPSV 180 TIFGAIMTDE MKCLGITKGT DMAEPSLFSP CMAKPEREID FLGIVEGGDA IAYGSGPSDA 240 AGEACCNFIT HHRSITLDLV LSQPNPYAG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX616349 | 0.0 | JX616349.1 Gossypium hirsutum clone NBRI_GE60935 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012458573.1 | 0.0 | PREDICTED: uncharacterized protein LOC105779372 | ||||
TrEMBL | A0A0D2W053 | 0.0 | A0A0D2W053_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.012G169000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20789 | 3 | 6 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.012G169000.1 |
Publications ? help Back to Top | |||
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