PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G169000.1
Common NameB456_012G169000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 270aa    MW: 29062.1 Da    PI: 5.5891
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G169000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.48e-11491390
                        EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS.-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
                  B3  3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesg.rsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88
                        k++++ d +  +rl +p k + +     g     +  ++++ + g + W +++++ +++ ++ vl+ GW++Fv +n+Lk+gD+++ + d + +
  Gorai.012G169000.1  4 KKFKTTDIN--KRLAIPGKILPSLpafnG-----GHAVMIQLKYGiNIWPIYCTVrENGYKKPVLSVGWRKFVADNKLKTGDIITMYKDFEdE 89
                        556444444..458888888877754322.....33567677777899*****8855555669**********************99653335 PP

                        EE CS
                  B3 89 ef 90
                        ++
  Gorai.012G169000.1 90 DG 91
                        54 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.7E-111108IPR015300DNA-binding pseudobarrel domain
CDDcd100171.37E-151101No hitNo description
SuperFamilySSF1019367.46E-10297IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.8E-4298IPR003340B3 DNA binding domain
PfamPF023624.5E-81191IPR003340B3 DNA binding domain
PROSITE profilePS508639.84145103IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MFSKKFKTTD INKRLAIPGK ILPSLPAFNG GHAVMIQLKY GINIWPIYCT VRENGYKKPV  60
LSVGWRKFVA DNKLKTGDII TMYKDFEDED GGSHFRVEVE KPPAASKQDR SHGTLPSSSV  120
IAFNDHEVHG TNSGNEADRI PNKALDDGAI NLEGGIPIME LPDVATDTLV DGHVIAKPSV  180
TIFGAIMTDE MKCLGITKGT DMAEPSLFSP CMAKPEREID FLGIVEGGDA IAYGSGPSDA  240
AGEACCNFIT HHRSITLDLV LSQPNPYAG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6163490.0JX616349.1 Gossypium hirsutum clone NBRI_GE60935 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458573.10.0PREDICTED: uncharacterized protein LOC105779372
TrEMBLA0A0D2W0530.0A0A0D2W053_GOSRA; Uncharacterized protein
STRINGGorai.012G169000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2078936
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]