PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.012G168900.1 | ||||||||
Common Name | B456_012G168900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 243aa MW: 27094.1 Da PI: 7.0784 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.9 | 4.2e-14 | 9 | 96 | 1 | 89 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrs 88 ffk+lt dv k rlv+pk++ + + g + + +++l+ +g+ Wevk+++rkk+ vl+ GWk+Fv an+Lk+gD ++ + d++ Gorai.012G168900.1 9 FFKELTDTDVKK--RLVVPKEYQDFFlpsyG---RLPAKIKLMY-DGKIWEVKCTVRKKGYLkPVLSVGWKKFVVANELKVGDRITMYKDEDG 95 899997777776..59*****9876697543...4677899887.9********77544433699*********************9944433 PP E CS B3 89 e 89 Gorai.012G168900.1 96 F 96 3 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.16E-17 | 7 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.321 | 7 | 107 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.8E-18 | 8 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.12E-23 | 8 | 105 | No hit | No description |
SMART | SM01019 | 6.8E-10 | 9 | 104 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.7E-11 | 9 | 95 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MAAHSGIIFF KELTDTDVKK RLVVPKEYQD FFLPSYGRLP AKIKLMYDGK IWEVKCTVRK 60 KGYLKPVLSV GWKKFVVANE LKVGDRITMY KDEDGFSHYM VEVEKPPASN QHDTLPDSPA 120 LSFIHHKPDE TTLKYRKEVP EDLAGAHHQP DIAPMNIPVN AWQRPSIGMF GTNVSNERAD 180 HFSLMTYGSG TSAAGGIGEA CPEIITDHHQ DLSLDLVRRQ PGTIPPPYVG EVKLDLTLAP 240 PN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016679336.1 | 1e-176 | PREDICTED: uncharacterized protein LOC107898334 | ||||
TrEMBL | A0A0D2V7D3 | 1e-180 | A0A0D2V7D3_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.012G168900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM19753 | 2 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24650.1 | 2e-06 | DNA binding;DNA binding;sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | Gorai.012G168900.1 |
Publications ? help Back to Top | |||
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