PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G168800.1
Common NameB456_012G168800
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 151aa    MW: 17268 Da    PI: 9.2686
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G168800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3421.6e-13996189
                        EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                  B3  1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
                        ffk+lt  dv k  rlv+pk++ + +    g   + + +++l+  +g+ Wevk+++ +k+  + vl+ GWk Fv an+Lk+gD ++ + d++ 
  Gorai.012G168800.1  9 FFKELTDTDVKK--RLVVPKEYQDFFlpsyG---RLPAKIKLMY-DGKIWEVKCTVrTKGYLKPVLSVGWKMFVVANELKVGDRITMYKDEDG 95
                        899997777776..59*****9876697543...4677899887.9********7644444559**********************9944433 PP

                        E CS
                  B3 89 e 89
                         
  Gorai.012G168800.1 96 F 96
                        3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.9697107IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-167101IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.3E-178101IPR015300DNA-binding pseudobarrel domain
CDDcd100179.52E-218105No hitNo description
PfamPF023622.1E-10995IPR003340B3 DNA binding domain
SMARTSM010191.2E-79104IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MAAHSGIIFF KELTDTDVKK RLVVPKEYQD FFLPSYGRLP AKIKLMYDGK IWEVKCTVRT  60
KGYLKPVLSV GWKMFVVANE LKVGDRITMY KDEDGFSHYM VEVEKPPAGN QHGTLPNSPA  120
PSFIHHEPDE TTVEYRREVP KNTTSLILHR *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458575.11e-92PREDICTED: uncharacterized protein LOC105779374
RefseqXP_016679336.12e-92PREDICTED: uncharacterized protein LOC107898334
TrEMBLA0A0D2TQR71e-108A0A0D2TQR7_GOSRA; Uncharacterized protein
STRINGGorai.012G168800.11e-109(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1975325
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24650.13e-06DNA binding;DNA binding;sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]