PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G168700.1
Common NameB456_012G168700, LOC105779372
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 277aa    MW: 29724.9 Da    PI: 5.903
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G168700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.15.5e-12998190
                        EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEE.ETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3  1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltle.desgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87
                        f k+l++ d +  +rl++p k + +     g    ++  ++++ +   + W +++++rk++ +  vl+ GW++Fv +n+Lk+gD+++ + d +
  Gorai.012G168700.1  9 FSKKLKTTDIN--KRLTIPGKILPSLpafnG----GH-AVMIQlNYGTKIWPIYCTVRKNGYKkPVLSVGWRKFVADNKLKTGDIITMYKDFE 94
                        66777555554..469999999988865432....22.3444404566*******996555555***********************996533 PP

                        .SEE CS
                  B3 88 .sef 90
                         +++
  Gorai.012G168700.1 95 dEDG 98
                        3554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.8E-143115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-134104IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.9397110IPR003340B3 DNA binding domain
CDDcd100172.45E-167108No hitNo description
SMARTSM010193.7E-49105IPR003340B3 DNA binding domain
PfamPF023623.0E-91098IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MASQPTKMFS KKLKTTDINK RLTIPGKILP SLPAFNGGHA VMIQLNYGTK IWPIYCTVRK  60
NGYKKPVLSV GWRKFVADNK LKTGDIITMY KDFEDEDGGS HFRVEVEKPP AASKQDRSHG  120
TLPSSSVLAF NDHEVDGTNS GNEADRIPNK ALDDGAINLE GGIPIMELPD VATDTLVDGH  180
VIAKPSVTIF GAIMTDEMKC LGITKGTDMA EPSFLSPCMA KPEREIDFLG IAEGGDAIAY  240
GSGPSDAAGE ACCNFITHHR SVTLDLVLSQ PNPYAG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6163490.0JX616349.1 Gossypium hirsutum clone NBRI_GE60935 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458573.10.0PREDICTED: uncharacterized protein LOC105779372
TrEMBLA0A0D2S4820.0A0A0D2S482_GOSRA; Uncharacterized protein
STRINGGorai.012G168700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2078936
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]