PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G167700.1
Common NameB456_012G167700
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 192aa    MW: 21599.3 Da    PI: 10.337
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G167700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.94.8e-10997190
                        EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                  B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90
                        f k+l   ++  ++rl +p k   +  g +    ++++l+    + W + +++rk++ +  v+++GW++Fv  n+Lk gD v+++ ++++++
  Gorai.012G167700.1  9 FSKKL--TYTDINKRLAIPTKIWPSLpGFNRSHAVKIQLMY-GTKIWPIDCTVRKQGYTkPVFSRGWRKFVVHNKLKIGDRVTIYKVQHQDG 97
                        55666..5666677899999998888765655556666665.669******8866665579**********************995544443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-12692IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-12694IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.8977109IPR003340B3 DNA binding domain
CDDcd100173.63E-158107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MAVQATMMFS KKLTYTDINK RLAIPTKIWP SLPGFNRSHA VKIQLMYGTK IWPIDCTVRK  60
QGYTKPVFSR GWRKFVVHNK LKIGDRVTIY KVQHQDGSSH YRVEVEKPAA GNHEVDETTV  120
TRHRREQLPN APMISMLASV PINTLVDDHV IITKPPVCRI FGTNISGEAC CKISTGQRLS  180
LDLVLSQPTI C*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2430830.0AC243083.1 Gossypioides kirkii clone GKH003A06-jng, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458573.11e-53PREDICTED: uncharacterized protein LOC105779372
TrEMBLA0A0D2V6I71e-141A0A0D2V6I7_GOSRA; Uncharacterized protein
STRINGGorai.012G167700.11e-142(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2483734
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]