PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G167400.1

Common Name

B456_012G167400

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 296aa MW: 33984.8 Da PI: 9.0875

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G167400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	37	5.9e-12	8	110	1	99
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkl 84 f+k lt+ d +k+ l++p k ++ +g +++++++d +g+ W + ++ r++++ vl+kGW +Fv+ +L +gD+v+ Gorai.012G167400.1 8 FIKRLTKTDIGKR--LSVPSKKK-RCfldfDGR--HQVDVKVKDDNGKDWLFGCSKRRGRDNypkPVLSKGWLQFVRCWKLAVGDTVIVNW 93 6777777777765..89998875.445855444..6799*************776665557889**********************5 PP -.SS.SEE..EEEEE-S CS B3 85 d.gr.sefelvvkvfrk 99 + ++ ++++++kv+r+ Gorai.012G167400.1 94 VmEKdGKGNYRIKVIRT 110 43444999999999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	7.5E-15	4	94	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	9.361	6	111	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	2.55E-11	6	104	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	8.8E-9	8	109	IPR003340	B3 DNA binding domain
CDD	cd10017	3.64E-16	8	109	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MAIEKLQFIK RLTKTDIGKR LSVPSKKKRC FLDFDGRHQV DVKVKDDNGK DWLFGCSKRR 60 GRDNYPKPVL SKGWLQFVRC WKLAVGDTVI VNWVMEKDGK GNYRIKVIRT GVLPLVQNRD 120 ADRAIASNRS PERTITYDRT EELRNLPKFI DFFELDSKQR EMEHPSNLAL HNINVDEVLI 180 TSSAAPYSKL HDADRVMAVA AYTDVEQEAT ITFAGTELTV SYEQTEGLHN QPGLMFEFIS 240 QKPDETDRKS RAIDCSDLGS QEQREMEHPS ILALHNINMV KMRVTSSRTP YIKFF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243083	0.0	AC243083.1 Gossypioides kirkii clone GKH003A06-jng, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D2S465	0.0	A0A0D2S465_GOSRA; Uncharacterized protein
STRING	Gorai.012G167400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17835	4	7

Link Out ? help Back to Top
Phytozome	Gorai.012G167400.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]