PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G166500.1
Common NameB456_012G166500, LOC105779672
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 489aa    MW: 51182 Da    PI: 8.0412
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G166500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP133.22.3e-411262312113
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaa 91 
                         +++k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++  ++s +ss+s+ s++   
  Gorai.012G166500.1 126 PPAKRSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGSTLSAP--- 213
                         5789*****************************************************************9998888888888854444... PP

                 TCP  92 ksaakskksqksaasalnlake 113
                             +sk++++s + al+la +
  Gorai.012G166500.1 214 ----PSKSAPHSFHGALALASH 231
                         ....333333333333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.0E-39131252IPR005333Transcription factor, TCP
PROSITE profilePS5136928.542132186IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MELTYSQNNK QTNNNTNLVS FDGTTTTSSA PSSTSNNNNS PFNITSISHL HRRLLHPTTS  60
STATVITTAT PPLSSSSSSS SSSTTKTNPA QPVDASLAIA TRSSASLNID DSTKKNQPNL  120
PPSSNPPAKR STKDRHTKVD GRGRRIRMPA ACAARVFQLT RELGHKSDGE TIEWLLQQAE  180
PAIIAATGTG TIPANFSTLN VSLRSSGSTL SAPPSKSAPH SFHGALALAS HHHPYEEGFA  240
HSALFGFHHQ QQQLLRAGQI AETLPAGGSG SGGGGNSSEN YMRKRFREDL FKDDNQQQGE  300
TGDGGGSGDG DSGGDGSSIK AFKTGLPQLH KPSNILPATA MWAVAPAPSS TTGSTFWMLP  360
VTTTGPSILT AASGAGSSEP QMWPFGTASG NTLQAPLHFV PRFNLQGDLE SQGGRASPLQ  420
LGSMLLQQQH QPSQHLGLGL SESNLGMLAA LNAYSRGGPN INSDQNNPME HHQQQGTNSG  480
DENPNNSQ*
Functional Description ? help Back to Top
Source Description
UniProtCan specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458991.10.0PREDICTED: transcription factor TCP8-like
SwissprotQ9C5184e-88TCP8_ARATH; Transcription factor TCP8
TrEMBLA0A0D2S4290.0A0A0D2S429_GOSRA; Uncharacterized protein
STRINGGorai.012G166500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102182433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.14e-79TCP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]