PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G159500.1

Common Name

B456_012G159500

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 808aa MW: 92341.3 Da PI: 6.6253

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G159500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	68.2	1.6e-21	77	174	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 +Wt q+v++Li+a+ +++e+ ++++ k ++W vsk m erg+++sp+qC++k+++lnkryk++++ +k+ +++++++ Gorai.012G159500.1 77 KWTVQMVKLLINAVCYIDEDASSDCqggikrkpsmsHKIGKWTCVSKLMVERGYRVSPQQCEDKFNDLNKRYKRLNDVLGKGtSCKVVEKP 167 7*******************9977778888888899******************************************669999999 PP trihelix 80 pyfdqle 86 ++d ++ Gorai.012G159500.1 168 EHLDVMD 174 9988886 PP
2	trihelix	66.2	6.8e-21	478	571	1	82
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 +Wt ++v++Li++ ++++e+ ++++ +k ++W+ vsk+m erg+ +sp+qC++k++nlnk y+++++ +++ +++++++ Gorai.012G159500.1 478 KWTGKMVKLLITILSYIGEDPSTDCagnqikvssllRKLGKWKCVSKVMLERGYIVSPQQCEDKFNNLNKTYRRLNDLLGRGtSCKVVENP 568 7********************988899999999999*****************************************9558888777 PP trihelix 80 pyf 82 +++ Gorai.012G159500.1 569 KLL 571 666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.5E-18	75	197	No hit	No description
Pfam	PF13837	3.7E-18	476	600	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 808 aa Download sequence Send to blast
MEGNPVSDDN LIQGDGSFQV HEGLNPQFYQ FQDVMKEIGK SCDDNWNNFD EEGGGGCDGC 60 CDGGCKGKGE FLWRRVKWTV QMVKLLINAV CYIDEDASSD CQGGIKRKPS MSHKIGKWTC 120 VSKLMVERGY RVSPQQCEDK FNDLNKRYKR LNDVLGKGTS CKVVEKPEHL DVMDVSDKVK 180 EEVKKILSSK NLFYEEMCLY HTGNRLYLPQ DPKLQCSLQS RQYNGDNEFE KELHDAEPDD 240 VFHKGNDVSL NGMEYGKSSA YGLQEQWMAF RLLELQKLKL QIQVQKLELE KKRFKWRRTN 300 WNQDKDLDKT RLENECMKLA NELLAFELGT RKGVVSETDV TKDLLGLFTV VNIVTSCFLK 360 QYVMVFCFIC FQAITNFEHK PVVSCVFCVT CMFCKPSAGG NMLQEWEYGC LGLQGSIQPQ 420 NEQQPCTSKL PSAFGSVENE RREVTVIEDD VTNYAIQCMR EHNEAGKNED GPPWQRMKWT 480 GKMVKLLITI LSYIGEDPST DCAGNQIKVS SLLRKLGKWK CVSKVMLERG YIVSPQQCED 540 KFNNLNKTYR RLNDLLGRGT SCKVVENPKL LDIINVSEKG KEDVRKLLMS KHLFFEEMCS 600 YHNGNRLYLP HDPDLLQSLL FILKNEDDYE LLDSNQPVPD KKAGVTAKDN EDFAEFSAKW 660 LELISENGIA PSGSNQTLNA QGDATEYNGA NSGFSAEIST LWFKPMNDNE VVGPTSSLKP 720 SCFNQIPDTE DNEADGSQWM TRRAYQLEKQ KLRLKSKVLD LEKQRLKWRR RSWKQDMELE 780 KMRLVNKCLK HGNECIALQL KGKKIGS*

Sequence ? help Back to Top

Protein Sequence Length: 808 aa Download sequence Send to blast

MEGNPVSDDN LIQGDGSFQV HEGLNPQFYQ FQDVMKEIGK SCDDNWNNFD EEGGGGCDGC  60
CDGGCKGKGE FLWRRVKWTV QMVKLLINAV CYIDEDASSD CQGGIKRKPS MSHKIGKWTC  120
VSKLMVERGY RVSPQQCEDK FNDLNKRYKR LNDVLGKGTS CKVVEKPEHL DVMDVSDKVK  180
EEVKKILSSK NLFYEEMCLY HTGNRLYLPQ DPKLQCSLQS RQYNGDNEFE KELHDAEPDD  240
VFHKGNDVSL NGMEYGKSSA YGLQEQWMAF RLLELQKLKL QIQVQKLELE KKRFKWRRTN  300
WNQDKDLDKT RLENECMKLA NELLAFELGT RKGVVSETDV TKDLLGLFTV VNIVTSCFLK  360
QYVMVFCFIC FQAITNFEHK PVVSCVFCVT CMFCKPSAGG NMLQEWEYGC LGLQGSIQPQ  420
NEQQPCTSKL PSAFGSVENE RREVTVIEDD VTNYAIQCMR EHNEAGKNED GPPWQRMKWT  480
GKMVKLLITI LSYIGEDPST DCAGNQIKVS SLLRKLGKWK CVSKVMLERG YIVSPQQCED  540
KFNNLNKTYR RLNDLLGRGT SCKVVENPKL LDIINVSEKG KEDVRKLLMS KHLFFEEMCS  600
YHNGNRLYLP HDPDLLQSLL FILKNEDDYE LLDSNQPVPD KKAGVTAKDN EDFAEFSAKW  660
LELISENGIA PSGSNQTLNA QGDATEYNGA NSGFSAEIST LWFKPMNDNE VVGPTSSLKP  720
SCFNQIPDTE DNEADGSQWM TRRAYQLEKQ KLRLKSKVLD LEKQRLKWRR RSWKQDMELE  780
KMRLVNKCLK HGNECIALQL KGKKIGS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX614399	1e-148	JX614399.1 Gossypium hirsutum clone NBRI_GE57745 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012458111.1	0.0	PREDICTED: uncharacterized protein LOC105778907
TrEMBL	A0A0D2S3V8	0.0	A0A0D2S3V8_GOSRA; Uncharacterized protein
STRING	Gorai.012G159500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22149	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	2e-80	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Gorai.012G159500.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]