PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G151300.1

Common Name

B456_012G151300

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 372aa MW: 41603 Da PI: 7.3946

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G151300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	26.3	1.7e-08	243	289	17	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 A+rsR RK+++i+eLe+ v++L+ae ++ ele l+++ l +e+ Gorai.012G151300.1 243 AQRSRGRKLQYIAELERNVQALQAEGSEVSAELEFLNQQNLILSMEN 289 99***********************************9998887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.5E-4	224	291	IPR004827	Basic-leucine zipper domain
CDD	cd14703	9.37E-15	240	282	No hit	No description
SuperFamily	SSF57959	3.15E-6	240	285	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.8E-8	242	285	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MANSKGSTNI RNLMFAGKHA LLPPKSPFPI ASPVYTDYIP NNVIGSKVIQ KSRVGSTYHQ 60 CTSSESHLIE EQPSWLDDLL NEPETPMYKG RHRRSSSDSF AFIDVSNAPN VDYGARDECR 120 YKSMISSPSW THQDFDHHNQ KDARVNSFHA NVNLVKQNNR AWDSTSLRES TFIQGLGSSC 180 TLEEPEAPPS TASEKKDSAE SASPNAKGSS EKKDNSHTKS SSSDTDSKRA KHTFVIVLSR 240 QFAQRSRGRK LQYIAELERN VQALQAEGSE VSAELEFLNQ QNLILSMENK ALKQRLESLA 300 QEQAIKYLEQ EVLEREIGRL RVMYQQQNQQ QPSSSHQCSS SRDLDSQFAN LSLKHNDTSS 360 SLDPITGPVR I*

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MANSKGSTNI RNLMFAGKHA LLPPKSPFPI ASPVYTDYIP NNVIGSKVIQ KSRVGSTYHQ  60
CTSSESHLIE EQPSWLDDLL NEPETPMYKG RHRRSSSDSF AFIDVSNAPN VDYGARDECR  120
YKSMISSPSW THQDFDHHNQ KDARVNSFHA NVNLVKQNNR AWDSTSLRES TFIQGLGSSC  180
TLEEPEAPPS TASEKKDSAE SASPNAKGSS EKKDNSHTKS SSSDTDSKRA KHTFVIVLSR  240
QFAQRSRGRK LQYIAELERN VQALQAEGSE VSAELEFLNQ QNLILSMENK ALKQRLESLA  300
QEQAIKYLEQ EVLEREIGRL RVMYQQQNQQ QPSSSHQCSS SRDLDSQFAN LSLKHNDTSS  360
SLDPITGPVR I*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012460807.1	0.0	PREDICTED: uncharacterized protein At4g06598-like
Swissprot	Q8W3M7	3e-61	Y4598_ARATH; Uncharacterized protein At4g06598
TrEMBL	A0A0D2W0Z9	0.0	A0A0D2W0Z9_GOSRA; Uncharacterized protein
STRING	Gorai.012G151300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3360	24	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58110.2	7e-97	bZIP family protein

Link Out ? help Back to Top
Phytozome	Gorai.012G151300.1

Publications ? help Back to Top
Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4. DNA Res., 2001. 8(6): p. 285-90 [PMID:11853315] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]