PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.012G151200.1 | ||||||||
Common Name | B456_012G151200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 125aa MW: 14009.2 Da PI: 7.5025 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.2 | 1.8e-10 | 4 | 92 | 1 | 88 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgr 87 f+kvlt+ d ++ l+lp +++++ + ++++ +l+++d g W++ + + +sg + +GW +Fv+ ++L++gD +v++ d++ Gorai.012G151200.1 4 FIKVLTKIDIERT--LSLPDSCLQAApqlQ-RSHGGEKLQVKDDVGILWNFHC--TIRSGVfpkLDIVSGWIQFVRFKQLNTGDAIVLYKDDD 91 8899988888876..9******98889863.3347779***************..7777776667788********************95544 PP S CS B3 88 s 88 + Gorai.012G151200.1 92 T 92 3 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.92E-10 | 3 | 92 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.0E-12 | 3 | 92 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.06E-12 | 3 | 104 | No hit | No description |
Pfam | PF02362 | 2.1E-8 | 4 | 91 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MAIFIKVLTK IDIERTLSLP DSCLQAAPQL QRSHGGEKLQ VKDDVGILWN FHCTIRSGVF 60 PKLDIVSGWI QFVRFKQLNT GDAIVLYKDD DTLTGPHYKI EVLKGHGDDY SSFAQMYIKS 120 CYAS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012458784.1 | 6e-73 | PREDICTED: uncharacterized protein LOC105779536 | ||||
TrEMBL | A0A0D2UZK3 | 2e-87 | A0A0D2UZK3_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.012G151200.1 | 4e-88 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18968 | 4 | 8 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.012G151200.1 |
Publications ? help Back to Top | |||
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