PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G151100.1
Common NameB456_012G151100
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 120aa    MW: 13408.4 Da    PI: 8.7332
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G151100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.44.6e-12491187
                        EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3  1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgr 87
                        ffkvlt+ d  ++  l+lp +++++   ++ ++++k+l+++d  g  W++ +  + +sg      + +GW +Fv+ ++L++gD++v+  d++
  Gorai.012G151100.1  4 FFKVLTKIDIERT--LSLPDSCLQALqqSQRSHGGKKLKVKDDVGILWNFHC--TIRSGVapkLDIVSGWIQFVRFKQLNTGDVIVLNKDDD 91
                        8999999998877..9******98888755566899****************..5555555568899********************96544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-12392IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-11392IPR015300DNA-binding pseudobarrel domain
CDDcd100173.97E-123104No hitNo description
PfamPF023626.7E-10491IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MASFFKVLTK IDIERTLSLP DSCLQALQQS QRSHGGKKLK VKDDVGILWN FHCTIRSGVA  60
PKLDIVSGWI QFVRFKQLNT GDVIVLNKDD DTLTGPHYKI EVFKGDADGY SSFVHKNEI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458784.15e-78PREDICTED: uncharacterized protein LOC105779536
TrEMBLA0A0D2VTK82e-82A0A0D2VTK8_GOSRA; Uncharacterized protein
STRINGGorai.012G151100.14e-83(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1896848
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]