PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G151000.2

Common Name

B456_012G151000

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 327aa MW: 37852.1 Da PI: 7.9392

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G151000.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53.8	3.6e-17	56	140	7	95
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ++ l+ + l++p+kf++++g + s tl+ + gr+W v+l r ++r++l +GW+ Fv+ ++ g fvvFk++g+s f +v Gorai.012G151000.2 56 VASILQDKKLRIPNKFVKKFGDE--LSSVATLTVPGGRQWLVEL--REEDKRIWLDNGWNTFVEYYSICIGYFVVFKYEGNSHFGVHVY 140 556677788******999855..7779***********..********************************999977665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	3.14E-21	45	142	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	7.7E-22	49	142	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	13.437	50	143	IPR003340	B3 DNA binding domain
CDD	cd10017	1.63E-15	50	141	No hit	No description
SMART	SM01019	1.3E-14	51	145	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.5E-13	57	140	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
KYQTIKEYIK ILRIWSPEFL FFIFVSDDQR KATMSQPVGP SLPLNNSSCI FYKLIVASIL 60 QDKKLRIPNK FVKKFGDELS SVATLTVPGG RQWLVELREE DKRIWLDNGW NTFVEYYSIC 120 IGYFVVFKYE GNSHFGVHVY NLKSSEINYL SNNSREPGDF AEITGSSSYF LVDKDVDESL 180 DHEKKKYKIS TGLHQENELR DLRATFQSTL DKGIQFNGVE LMSIGDEGGP CFSNETLRYT 240 IKQEVEPSMD EQEPFRKFKV KEELPTLDSP RVLRRRRDVT TEEKQGAFHA ASMFKPDNPF 300 CRIILRPSYV YKGVLLVSYV TQTRPF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012458783.1	0.0	PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBL	A0A0D2TQ26	0.0	A0A0D2TQ26_GOSRA; Uncharacterized protein (Fragment)
STRING	Gorai.012G151000.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	2e-47	B3 family protein

Link Out ? help Back to Top
Phytozome	Gorai.012G151000.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]