PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G148900.2
Common NameB456_012G148900, LOC105780083
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HB-PHD
Protein Properties Length: 955aa    MW: 104418 Da    PI: 6.4845
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G148900.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox41.81.8e-138819231052
                         HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
            Homeobox  10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                           ++ L++ F++n+yp+++++e LAk+lg+t rqV+ WF N R
  Gorai.012G148900.2 881 AVTQGLQKSFKQNQYPDRAMKESLAKELGITFRQVSKWFENAR 923
                         56889************************************99 PP
2PHD42.31.7e-14473528151
                         SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                 PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                         +C++Cg+    ++++++lCdg C++ fH++Cl+++l +e++p +   wlC+ C++k
  Gorai.012G148900.2 473 FCAICGSkdIPANNDIILCDGaCDRGFHQYCLQPPLLKEDIPPDdeGWLCPGCDCK 528
                         7******554459*******66*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.06E-14463531IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.5E-14470527IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.332471528IPR019787Zinc finger, PHD-finger
CDDcd155042.82E-26473525No hitNo description
SMARTSM002493.1E-11473526IPR001965Zinc finger, PHD-type
PfamPF006289.3E-12473528IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590474525IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.603.0E-14861923IPR009057Homeodomain-like
SuperFamilySSF466897.27E-12865924IPR009057Homeodomain-like
SMARTSM003894.4E-12871933IPR001356Homeobox domain
PfamPF000468.0E-11881923IPR001356Homeobox domain
CDDcd000861.85E-12883923No hitNo description
PROSITE profilePS5007112.957886929IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 955 aa     Download sequence    Send to blast
MIEVEHTGGS SSQANSENGN HSHFHPEEST SELANEFRSE CLLTEANGSG FMNTETSEET  60
AEHSQPLCND LSKNTISESL GLLPEDSSKN IQADQISSPQ LCSAEPTVSS GELPEQQQQL  120
DSQSLPNGIG NSLSTGVSNE AVELNPKDII MSNGGKHLQL PSKDANPLGL PQELASTNPT  180
IQQPDHHCED MSKDSGLEQH ETTPKNLVKN SGQRKGGKTS KQVQKKNLRS LRSSDRVLRS  240
KSQEKSKATE SSKKSTATEL SKKSTATESS KKSTATESSK KSTVTDSSKK PTATESSKKS  300
TATESSKKLT ATESSKKSTA TESSKKSTAT ESSKKSTATE SSKKSTATES SNKLTNVGPS  360
KQQKRKKRKR EKKEEKKEVS DEYLRIRKHL RYLLNRISYE RCLIAAYSAE GWKGLSLEKL  420
KPEKELQRAA SEILRRKLKI RDLFQRIESL CTEGRLAESL FDSEGEIDSE DIFCAICGSK  480
DIPANNDIIL CDGACDRGFH QYCLQPPLLK EDIPPDDEGW LCPGCDCKFD CIELVNESQG  540
TNFSLEDSWE KVFPEAALAA GGQNQDPNYG LPSDDSDDND YNPDISENDE KDQEDESSSD  600
ESDFTSTSDE VELPAKVDPY LGLPSDDSED DDYNPDGPDQ DHDNVAKSES LSSDFSSDSD  660
DLGAMLVDDI SSQKGHMSNG SSRKSKSKKP KLGGKKSLNS EVLTTMEPAS GEDDATVSEK  720
RSIPRLDYKR LYDETYGNVP SSSSDDEDWN DGTAPRKKKK RNAEVATTSA NGNASPTGSV  780
SVSNGLKNPG EKRAPRRSAN GLKQNRGERH TTKRSANGLK QNPEEDHTPR RRTRKKSNQK  840
GTAKLPKATP KSPAKLPEPT PTPGSSGKKA GSSTYKRLGE AVTQGLQKSF KQNQYPDRAM  900
KESLAKELGI TFRQVSKWFE NARWFFNNSN NVSGESPKKV AGNDITPSAR RKKK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1363369KRKKRKR
2364369RKKRKR
3364371RKKRKREK
4364372RKKRKREKK
5365372KKRKREKK
6830836RRTRKKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012459645.10.0PREDICTED: homeobox protein HAT3.1
RefseqXP_012459646.10.0PREDICTED: homeobox protein HAT3.1
RefseqXP_012459647.10.0PREDICTED: homeobox protein HAT3.1
RefseqXP_012459648.10.0PREDICTED: homeobox protein HAT3.1
TrEMBLA0A0D2V6S50.0A0A0D2V6S5_GOSRA; Uncharacterized protein
STRINGGorai.012G148900.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.15e-88Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]