PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G135600.1
Common NameB456_012G135600, LOC105779902
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 289aa    MW: 30807.1 Da    PI: 7.3824
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G135600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.54.7e-111054244
                        SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                         +W+ e d+ + +a + ++ +   +W++Ia+ ++ g+tl+++k+++
  Gorai.012G135600.1 10 SKWSREQDKAFENALASYPEDfsdRWEKIAANVP-GKTLEEIKEHY 54
                        58********************************.**********9 PP
2Myb_DNA-binding42.12.1e-13119163347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT++E+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
  Gorai.012G135600.1 119 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 163
                         6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.362762IPR017884SANT domain
SMARTSM007172.3E-8860IPR001005SANT/Myb domain
SuperFamilySSF466899.66E-121066IPR009057Homeodomain-like
PfamPF002491.8E-81054IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-61155IPR009057Homeodomain-like
CDDcd001678.99E-101157No hitNo description
PROSITE profilePS5129417.581111168IPR017930Myb domain
SuperFamilySSF466891.2E-16114169IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-17116166IPR006447Myb domain, plants
SMARTSM007173.2E-10116166IPR001005SANT/Myb domain
CDDcd001677.81E-10119164No hitNo description
Gene3DG3DSA:1.10.10.601.3E-10119162IPR009057Homeodomain-like
PfamPF002492.6E-11119163IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MTVEEADSSS KWSREQDKAF ENALASYPED FSDRWEKIAA NVPGKTLEEI KEHYELLEDD  60
VNRIESGCVP LPPYNSSESS AADEGAGKKG SSHSGNCNSE SNHGSKNSRS DQERRKGIAW  120
TEDEHRLFLL GLDKYGKGDW RSISRNFVVT RTPTQVASHA QKYFIRLNSM NKDRRRSSIH  180
DITSVGNGDV SAPQGPITGQ SNGTASGGSA AKSTKQPPGH SVAPPCISVH GVPTMGQPIG  240
GPLISAVGTP VNLPAPAHMA YGVRATLPGA VVPGAPVTYP MPHTAAHR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-1712771176RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.10240.0flower|seedling| flowering
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012459337.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_012459338.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_012459340.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_012459341.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_012459342.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_012459343.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_012459344.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_012459345.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_012459346.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_012459347.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_012459348.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_012459349.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_012459351.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_012459352.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ9FNN61e-124SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A0D2VZ460.0A0A0D2VZ46_GOSRA; Uncharacterized protein
STRINGGorai.012G135600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35562861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-121MYB family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  3. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]