PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G134200.1
Common NameB456_012G134200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 237aa    MW: 27535.9 Da    PI: 10.0942
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G134200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF849.1e-27959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krien++ rqvtfskRr+g+lKK +ELSvLCda++ +iifs+tgk+  y++
  Gorai.012G134200.1  9 KRIENQTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSTTGKMCQYCT 59
                        79**********************************************986 PP
2K-box69.41.1e-2373157386
               K-box   3 kssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 
                         k +g+   e+ + e+l++ela L+ke++ Lq + R++ Ged++s+ ++eL qLe++Le+s+ k+R++Knell +q+++l++k k+
  Gorai.012G134200.1  73 KVTGTCiPEHDNREHLYNELAVLRKETRRLQLSMRRYTGEDMSSIPFEELDQLEHELERSVIKVRERKNELLQQQLDNLRRKRKK 157
                         5555555677899*********************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.3E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.081161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-30277IPR002100Transcription factor, MADS-box
CDDcd002653.65E-38276No hitNo description
PRINTSPR004047.7E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.6E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-273859IPR002100Transcription factor, MADS-box
PfamPF014861.8E-1981157IPR002487Transcription factor, K-box
PROSITE profilePS5129712.94885185IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MGRGKIPIKR IENQTTRQVT FSKRRAGLLK KTHELSVLCD AQIGLIIFST TGKMCQYCTE  60
GYRMEQIIER YQKVTGTCIP EHDNREHLYN ELAVLRKETR RLQLSMRRYT GEDMSSIPFE  120
ELDQLEHELE RSVIKVRERK NELLQQQLDN LRRKRKKTAI CTAGCRNTER RSSISREEWK  180
LSQWSISKLW INSLSLENQA VCFSLLPFLN SSNPISSSLL SPTFKILMSS IVPLQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-18171169MEF2C
5f28_B5e-18171169MEF2C
5f28_C5e-18171169MEF2C
5f28_D5e-18171169MEF2C
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152156RKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM2364430.0HM236443.1 Gossypium hirsutum MADS27 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012459843.11e-109PREDICTED: protein TRANSPARENT TESTA 16-like
RefseqXP_016679920.11e-109PREDICTED: protein TRANSPARENT TESTA 16-like
RefseqXP_017613005.11e-109PREDICTED: protein TRANSPARENT TESTA 16-like
SwissprotQ9ATE53e-64FBP24_PETHY; MADS-box protein FBP24
TrEMBLA0A0D2V6241e-172A0A0D2V624_GOSRA; Uncharacterized protein
STRINGGorai.012G134200.11e-173(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2857623
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.23e-65MIKC_MADS family protein
Publications ? help Back to Top
  1. Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG
    In vivo imaging of MADS-box transcription factor interactions.
    J. Exp. Bot., 2006. 57(1): p. 33-42
    [PMID:16291798]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]