PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G130600.1
Common NameB456_012G130600, LOC105779659
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 344aa    MW: 39147.7 Da    PI: 6.8031
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G130600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11e-18142191255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr++  +g+WvAeIr p+e   r+r +lg+f+tae+Aa a+++ + kl+g
  Gorai.012G130600.1 142 LYRGVRQRQ-WGKWVAEIRLPRE---RTRLWLGTFDTAEDAALAYDRKAFKLRG 191
                         59****999.**********976...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.11E-33141201No hitNo description
Gene3DG3DSA:3.30.730.109.7E-32142200IPR001471AP2/ERF domain
SMARTSM003801.5E-36142205IPR001471AP2/ERF domain
PROSITE profilePS5103223.156142199IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-22142200IPR016177DNA-binding domain
PRINTSPR003675.0E-11143154IPR001471AP2/ERF domain
PfamPF008475.0E-12143191IPR001471AP2/ERF domain
PRINTSPR003675.0E-11165181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MADEIEKVKE IAKGKGVDFG VELERQQWKP VFDEASISQR PLKKIRSPQR RHHHLVHSSV  60
SYPSLPSSRL VFPFAFDGSF DSMSLPWQPQ NQQHMISFSP QPHQQQQQQL LQYCSGALNL  120
SPRGGMMGRL GQPVQPIHTS KLYRGVRQRQ WGKWVAEIRL PRERTRLWLG TFDTAEDAAL  180
AYDRKAFKLR GKNARLNFPE LFFKKDKDTS PSSPEPNQNQ NLPKQEHESP KLQSANMESM  240
SQGDNPGSEP TTKDMVQMTA EEGDSGSQAS MWEDMALAEA WFNAFPEEWG PLNPVWDDID  300
AANNLLSPSN LSFTNQNQQD FSEFDHQKQQ DSSSTSCPKK PFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-20141199160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5323107e-69EU532310.1 Gossypium barbadense clone I11-12 ISSR marker genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458964.10.0PREDICTED: ethylene-responsive transcription factor ERF054
TrEMBLA0A0D2V4T10.0A0A0D2V4T1_GOSRA; Uncharacterized protein
STRINGGorai.012G130600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21412775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28140.15e-55ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]