PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G117800.1

Common Name

B456_012G117800, LOC105781002

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 352aa MW: 39754 Da PI: 8.0512

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G117800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103	1.9e-32	68	121	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH rFv+ave+LGG+++AtPk +l++m++kgL+++hvkSHLQ+YR+ Gorai.012G117800.1 68 PRLRWTPDLHLRFVHAVERLGGQDRATPKLVLQMMNIKGLSIAHVKSHLQMYRS 121 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.729	64	124	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-30	64	122	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.3E-15	66	122	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.2E-23	68	123	IPR006447	Myb domain, plants
Pfam	PF00249	5.7E-10	69	120	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MERNSSTECS KTAPSEQSDH QVEAEADSES EENDGESMPR NGGSSSNSTV EENDKKPSVR 60 PYVRSKMPRL RWTPDLHLRF VHAVERLGGQ DRATPKLVLQ MMNIKGLSIA HVKSHLQMYR 120 SKKIDDPRQV ISDHRHLVQS GDGNIFSLNQ LPMLQGYNHH HQGDSSNTFR YRDTSWNGRH 180 FSMRNPYTSR SFTDKQIPVL HGTVTDKIFG SNWTNYNFRM DTSSFNTLLP SWKCHEVLKN 240 EISSSSPNLQ SFLTKPSAQA KVEDETNCSR NSAQERRAMK RTISDSNLDL DLTLRLTQAK 300 EEKRPSSEED DVGLSLSLCG PPSSSKLSRL KGEDDSSREN GRRVSTLDLT I*

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MERNSSTECS KTAPSEQSDH QVEAEADSES EENDGESMPR NGGSSSNSTV EENDKKPSVR  60
PYVRSKMPRL RWTPDLHLRF VHAVERLGGQ DRATPKLVLQ MMNIKGLSIA HVKSHLQMYR  120
SKKIDDPRQV ISDHRHLVQS GDGNIFSLNQ LPMLQGYNHH HQGDSSNTFR YRDTSWNGRH  180
FSMRNPYTSR SFTDKQIPVL HGTVTDKIFG SNWTNYNFRM DTSSFNTLLP SWKCHEVLKN  240
EISSSSPNLQ SFLTKPSAQA KVEDETNCSR NSAQERRAMK RTISDSNLDL DLTLRLTQAK  300
EEKRPSSEED DVGLSLSLCG PPSSSKLSRL KGEDDSSREN GRRVSTLDLT I*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-17	69	123	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-17	69	123	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-17	69	123	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-17	69	123	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-17	69	123	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-17	69	123	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-17	69	123	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-17	69	123	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-17	69	123	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-17	69	123	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-17	69	123	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-17	69	123	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00297	DAP	Transfer from AT2G38300	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012461015.1	0.0	PREDICTED: putative Myb family transcription factor At1g14600 isoform X1
TrEMBL	A0A0D2V4G2	0.0	A0A0D2V4G2_GOSRA; Uncharacterized protein
STRING	Gorai.012G117800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	8e-69	G2-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.012G117800.1
Entrez Gene	105781002

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]