PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G114700.1

Common Name

B456_012G114700, LOC105780757

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 274aa MW: 32657.7 Da PI: 8.3349

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G114700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	78.6	9e-25	34	116	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ qe+++ + +r e+++++ ++k++k lWe +s +mre+g++rs++qCk+kw+nl +ryk + + + + ++++++p++d+l+ Gorai.012G114700.1 34 QWSVQETKDFLMIRAELDQSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNLFTRYKGCGTVDAE---TVRQQFPFYDELQ 116 7******************************************************************8...47788****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0018	31	93	IPR001005	SANT/Myb domain
CDD	cd12203	2.50E-23	33	97	No hit	No description
Pfam	PF13837	1.8E-20	34	118	No hit	No description
PROSITE profile	PS50090	7.236	35	91	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MEGHHRHHHH HQQQHLQQQQ QPVSVNVEAD RFPQWSVQET KDFLMIRAEL DQSFMETKRN 60 KLLWEVISTR MREKGYNRSA EQCKCKWKNL FTRYKGCGTV DAETVRQQFP FYDELQAIFT 120 ARMQSVLCSE SEGGGATGSK KKAAQAQLSS DEEDDTEENE YSFRKKKKGK TGGGSSSKSG 180 SINIKEMLED FMRQQLQMEM QWREALESRE NERRMKEMEW RQTMEALENE RIMMERRWRE 240 REEQRRIREE ARAEKRDALI TALLNKLRRE DQM*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269\|PubMed:15310827}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269\|PubMed:15310827}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN127768	1e-60	JN127768.1 Theobroma cacao clone TCC_BC011L18, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012460704.1	0.0	PREDICTED: trihelix transcription factor GT-3b-like
Swissprot	O80450	1e-70	TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBL	A0A0D2V5A6	0.0	A0A0D2V5A6_GOSRA; Uncharacterized protein
STRING	Gorai.012G114700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2215	28	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	5e-51	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Gorai.012G114700.1
Entrez Gene	105780757

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]