PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G103400.1

Common Name

B456_012G103400, LOC105780984

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 322aa MW: 34171.9 Da PI: 9.4623

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G103400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.9	2.2e-38	76	135	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+alkcprC+stntkfCy+nny+l+qPr+fC++C+ryWt+GGalrnvPvGgg+r+nk+s+ Gorai.012G103400.1 76 EAALKCPRCESTNTKFCYFNNYNLTQPRHFCRTCKRYWTRGGALRNVPVGGGCRRNKRSK 135 7789*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-30	59	124	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.9E-32	78	133	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.413	79	133	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	81	117	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MVFSSIPAYL DPPHWQHHTN HQAGPSSSTS GHQLPPPPGP PQPPPAQQPQ GGGGAGSIRP 60 GSMTDRARLA NIHMPEAALK CPRCESTNTK FCYFNNYNLT QPRHFCRTCK RYWTRGGALR 120 NVPVGGGCRR NKRSKGSSSK SAVTDDRQTA SSSSRSSGST DILGLGTQVP PLRFMSPLHN 180 LTDFGLNYGT ISAPVGGPSD LSFQIASTWS GGATAAPGMI GWEHWRLQQA PQFPFLGGLE 240 SSSGLYQFET VGVEPSGHGG GPKISSSAAT QMASVKMDGN NQQELNLSKQ FLGVPGNDEY 300 WGGTAWTDLS RFSSSSTSNP L*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012460991.1	0.0	PREDICTED: dof zinc finger protein DOF5.1-like
TrEMBL	A0A0D2VXR5	0.0	A0A0D2VXR5_GOSRA; Uncharacterized protein
STRING	Gorai.012G103400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1713	28	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	2e-44	DNA binding with one finger 2.4

Link Out ? help Back to Top
Phytozome	Gorai.012G103400.1
Entrez Gene	105780984

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]