PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G100100.1
Common NameB456_012G100100, LOC105780765
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 317aa    MW: 35040.3 Da    PI: 7.0724
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G100100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.52e-17174228256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rq+ vWFqNrRa+ k
  Gorai.012G100100.1 174 RKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQIEVWFQNRRARTK 228
                         778899***********************************************98 PP
2HD-ZIP_I/II126.21.4e-40174264192
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prq++vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +l
  Gorai.012G100100.1 174 RKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQIEVWFQNRRARTKLKQTEVDCEYLKRCCETLAEENKRLQKELQELR-AL 263
                         69*************************************************************************************9.55 PP

         HD-ZIP_I/II  92 k 92 
                         k
  Gorai.012G100100.1 264 K 264
                         5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046185.0E-946140IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.602.2E-17157224IPR009057Homeodomain-like
PROSITE profilePS5007117.119170230IPR001356Homeobox domain
SuperFamilySSF466894.49E-18171239IPR009057Homeodomain-like
SMARTSM003891.2E-15172234IPR001356Homeobox domain
PfamPF000466.4E-15174228IPR001356Homeobox domain
CDDcd000866.54E-16174231No hitNo description
PROSITE patternPS000270205228IPR017970Homeobox, conserved site
SMARTSM003407.8E-25230273IPR003106Leucine zipper, homeobox-associated
PfamPF021831.5E-10230264IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MELALSLGDP SKPFSFLDKT AKLSSKDLGF CMGLGNGFKS QENGDDAFEG KNSTDGDEKR  60
VSSDPPLQLD LLPFSPVPRP QSSSQLRLSW LTDNQTDPWE GLGRGLDVNR LPLVAVADEA  120
EEKAAVSSPN SAVSMDFGIR KGSRRGKKEV EVEAVETERT STRASDDDDN GSTRKKLRLS  180
KEQSAFLEES FKEHSTLNPK QKLALAKQLN LRPRQIEVWF QNRRARTKLK QTEVDCEYLK  240
RCCETLAEEN KRLQKELQEL RALKTSQPFY MQLPATTLTM CPSCERVATA STTNASASTA  300
DAKTGGYPFF SSISNT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172178TRKKLRL
2222230RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012460716.10.0PREDICTED: homeobox-leucine zipper protein HOX11-like
SwissprotP466651e-96HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A0D2S0R50.0A0A0D2S0R5_GOSRA; Uncharacterized protein
STRINGGorai.012G100100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49282852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-72homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]