PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G098200.1
Common NameB456_012G098200, LOC105780671
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 364aa    MW: 41358.8 Da    PI: 7.0032
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G098200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.41.1e-1544103155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  ++n    k+ ++++lg ++ +e Aa a++ a++k++g
  Gorai.012G098200.1  44 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDDEEAAAHAYDLAALKYWG 103
                         57*******************999955656446*************************98 PP
2AP251.23.1e-16146197155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Gorai.012G098200.1 146 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 197
                         89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.26E-1144113No hitNo description
SuperFamilySSF541713.4E-1744113IPR016177DNA-binding domain
PfamPF008478.9E-1244103IPR001471AP2/ERF domain
PROSITE profilePS5103220.3145111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-1645112IPR001471AP2/ERF domain
SMARTSM003805.0E-2745117IPR001471AP2/ERF domain
PRINTSPR003674.2E-64657IPR001471AP2/ERF domain
CDDcd000182.80E-24146207No hitNo description
SuperFamilySSF541711.05E-17146207IPR016177DNA-binding domain
PfamPF008475.7E-12146197IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-17147206IPR001471AP2/ERF domain
SMARTSM003801.2E-24147211IPR001471AP2/ERF domain
PROSITE profilePS5103218.334147205IPR001471AP2/ERF domain
PRINTSPR003674.2E-6187207IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MAKLSQQDHK NTTQNNTSTA SNGVTKVKRT RRSVPRDSPP QRSSIYRGVT RHRWTGRYEA  60
HLWDKNCWNE SQNKKGRQVY LGAYDDEEAA AHAYDLAALK YWGQDTILNF PLSTYQKELK  120
EMEDQSREEY IGSLRRKSSG FSRGVSKYRG VARHHHNGRW EARIGRVFGN KYLYLGTYAT  180
QEEAATAYDM AAIEYRGLNA VTNFDLSRYI KWLKPNQTKP ENNPNPNPNI IDTTTTSLVT  240
PNPDQELDLT FFNGNNHNQQ LQESDVISET LLTQPRPVNA TSALGLLLQS SKFKEMMEMT  300
SAATDHRQST PMVSEPVRCG FPEDIQTYFE CQDSSCYGNG DDLIFGELNS FGPSMFQCDQ  360
LDA*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012460598.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-120AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0D2V3Q80.0A0A0D2V3Q8_GOSRA; Uncharacterized protein
STRINGGorai.012G098200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-103ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]