PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.012G094200.1 | ||||||||
Common Name | B456_012G094200, LOC105781058 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 206aa MW: 22352.5 Da PI: 5.2422 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 132.7 | 1.5e-41 | 61 | 160 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrr+C+++Cvlapyfp ++p+kf ++h++FGas+++k l++lpe++reda+ss+vyeA r+rdPvyG++g i++lq+q++ l+ Gorai.012G094200.1 61 PCAACKILRRRCVDKCVLAPYFPPTEPSKFIIAHRVFGASHIIKSLQELPESQREDAVSSMVYEASSRIRDPVYGCAGAIFQLQKQVSDLQ 151 7****************************************************************************************** PP DUF260 92 aelallkee 100 a+la++++e Gorai.012G094200.1 152 AQLAKAQAE 160 ****99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.369 | 60 | 161 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.5E-41 | 61 | 158 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MENNERGSIS PISIPTTFSY SPSSSFSSPL SQFSPSLPSP DSQSSSPPRA AAASPQLVLS 60 PCAACKILRR RCVDKCVLAP YFPPTEPSKF IIAHRVFGAS HIIKSLQELP ESQREDAVSS 120 MVYEASSRIR DPVYGCAGAI FQLQKQVSDL QAQLAKAQAE VVTLQCQQAN VLTLILEMSQ 180 SKEPIDTTCF LDDTCIVSPW EPLWT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-42 | 60 | 168 | 10 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-42 | 60 | 168 | 10 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012461085.1 | 1e-147 | PREDICTED: LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 9e-70 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A0D2V498 | 1e-145 | A0A0D2V498_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.012G094200.1 | 1e-146 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1141 | 28 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 5e-71 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.012G094200.1 |
Entrez Gene | 105781058 |
Publications ? help Back to Top | |||
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