PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G092900.4
Common NameB456_012G092900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 278aa    MW: 32127.8 Da    PI: 9.7605
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G092900.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.19.7e-0694115426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                           C ff + G+C  G +CkF+H+
  Gorai.012G092900.4  94 IVCEFFKA-GQCTKGFKCKFSHD 115
                         57996666.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.0E-590116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.18790117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-691115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-492116IPR000571Zinc finger, CCCH-type
SMARTSM003563.9160197IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.206160198IPR000571Zinc finger, CCCH-type
PfamPF165439.5E-10217266IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MPPKQQGKSK ADLAKKQKVV EDKTFGLKNK NKSKNVQKYV QNLQQSVQPK ADPSKVAAKK  60
KKEEEKAREK ELNDLFKIAV TQPKVPPGVD PKSIVCEFFK AGQCTKGFKC KFSHDLNVQR  120
KGEKIDIYSD KRDQETMEDW DQETLEKVVE SKKTEYNQNK PTEIVCKHFL EAVEKKQYGW  180
FWVCPNGGKD CHYRHALPPG YVLKSQMKAL LEEESEKITI EEEIENQRSK TTSSTPMTTE  240
LFMQWKTKKM EEREVSLAAQ RADRAKNDRM RYYLPAG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017612316.10.0PREDICTED: zinc finger CCCH domain-containing protein 11-like
SwissprotQ0JHZ21e-159C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLA0A0D2V4890.0A0A0D2V489_GOSRA; Uncharacterized protein
STRINGGorai.012G092900.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-138C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]