PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.012G092900.4 | ||||||||
Common Name | B456_012G092900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C3H | ||||||||
Protein Properties | Length: 278aa MW: 32127.8 Da PI: 9.7605 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.1 | 9.7e-06 | 94 | 115 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 C ff + G+C G +CkF+H+ Gorai.012G092900.4 94 IVCEFFKA-GQCTKGFKCKFSHD 115 57996666.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 5.0E-5 | 90 | 116 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.187 | 90 | 117 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-6 | 91 | 115 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 92 | 116 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.9 | 160 | 197 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.206 | 160 | 198 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF16543 | 9.5E-10 | 217 | 266 | IPR032378 | ZC3H15/TMA46 family, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MPPKQQGKSK ADLAKKQKVV EDKTFGLKNK NKSKNVQKYV QNLQQSVQPK ADPSKVAAKK 60 KKEEEKAREK ELNDLFKIAV TQPKVPPGVD PKSIVCEFFK AGQCTKGFKC KFSHDLNVQR 120 KGEKIDIYSD KRDQETMEDW DQETLEKVVE SKKTEYNQNK PTEIVCKHFL EAVEKKQYGW 180 FWVCPNGGKD CHYRHALPPG YVLKSQMKAL LEEESEKITI EEEIENQRSK TTSSTPMTTE 240 LFMQWKTKKM EEREVSLAAQ RADRAKNDRM RYYLPAG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017612316.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 11-like | ||||
Swissprot | Q0JHZ2 | 1e-159 | C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11 | ||||
TrEMBL | A0A0D2V489 | 0.0 | A0A0D2V489_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.012G092900.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20280.1 | 1e-138 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.012G092900.4 |
Publications ? help Back to Top | |||
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