PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G092900.2

Common Name

B456_012G092900

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 201aa MW: 23073.8 Da PI: 10.0399

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G092900.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.7	6.3e-06	94	115	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 C ff + G+C G +CkF+H+ Gorai.012G092900.2 94 IVCEFFKA-GQCTKGFKCKFSHD 115 57996666.*************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	5.0E-5	90	116	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.09E-6	90	115	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.187	90	117	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.8E-5	92	116	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MPPKQQGKSK ADLAKKQKVV EDKTFGLKNK NKSKNVQKYV QNLQQSVQPK ADPSKVAAKK 60 KKEEEKAREK ELNDLFKIAV TQPKVPPGVD PKSIVCEFFK AGQCTKGFKC KFSHDLNVQR 120 KGEKIDIYSD KRDQETMEDW DQETLEKVVE SKKTEYNQNK PTEIVCNSFF LNLSFHKLLV 180 VFHCLYFKIS ALLSCIFPLR *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012460080.1	1e-115	PREDICTED: zinc finger CCCH domain-containing protein 11-like
Refseq	XP_017612316.1	1e-115	PREDICTED: zinc finger CCCH domain-containing protein 11-like
Swissprot	Q0JHZ2	9e-87	C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBL	A0A0D2VXF7	1e-143	A0A0D2VXF7_GOSRA; Uncharacterized protein
STRING	Gorai.012G092900.1	1e-115	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20280.1	3e-83	C3H family protein

Link Out ? help Back to Top
Phytozome	Gorai.012G092900.2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]