PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.012G090200.3 | ||||||||
Common Name | B456_012G090200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 173aa MW: 20225.5 Da PI: 10.4457 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 50.8 | 2.1e-16 | 10 | 53 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 r e+ rq +skR++gilKKA+EL +LC+++va++ s++g+ Gorai.012G090200.3 10 RLEDLKARQAKYSKRKTGILKKAKELNILCEVDVALLFSSPSGR 53 5678889**********************************996 PP | |||||||
2 | K-box | 14.2 | 1.9e-06 | 121 | 154 | 48 | 81 |
K-box 48 lkeLqqLeqqLekslkkiRskKnellleqieelq 81 +++++ +e++L +sl+ Rs+Kn+l +eq + + Gorai.012G090200.3 121 INQIKMMEDHLIESLNGLRSRKNQLTIEQQIRER 154 578899*******************998865544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 21.726 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.6E-21 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.12E-20 | 1 | 80 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.58E-19 | 2 | 85 | No hit | No description |
PRINTS | PR00404 | 2.3E-14 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.9E-16 | 11 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-14 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-14 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MGRKKLKIQR LEDLKARQAK YSKRKTGILK KAKELNILCE VDVALLFSSP SGRPTLFVGK 60 NSNGLSSILK RLSNLSFEER EERRAYTIEL YEDELQELKH KLVQKSKILR DWRNPNNVED 120 INQIKMMEDH LIESLNGLRS RKNQLTIEQQ IRERESEVGL SISMKLFMHF QL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012458186.1 | 1e-106 | PREDICTED: MADS-box transcription factor 18-like | ||||
TrEMBL | A0A0D2S088 | 1e-120 | A0A0D2S088_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.012G090200.1 | 1e-114 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18750.1 | 3e-25 | AGAMOUS-like 65 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.012G090200.3 |
Publications ? help Back to Top | |||
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