PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G090200.1

Common Name

B456_012G090200

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 201aa MW: 23470.1 Da PI: 10.028

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G090200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	50.4	2.8e-16	10	53	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 r e+ rq +skR++gilKKA+EL +LC+++va++ s++g+ Gorai.012G090200.1 10 RLEDLKARQAKYSKRKTGILKKAKELNILCEVDVALLFSSPSGR 53 5678889*********************************9996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	1.57E-20	1	80	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	21.726	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.6E-21	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00266	3.83E-19	2	85	No hit	No description
PRINTS	PR00404	3.3E-14	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.8E-16	11	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.3E-14	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.3E-14	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MGRKKLKIQR LEDLKARQAK YSKRKTGILK KAKELNILCE VDVALLFSSP SGRPTLFVGK 60 NSNGLSSILK RLSNLSFEER EERRAYTIEM LKKIYENSES EFDPLSLSHD TNADIHKLYE 120 DELQELKHKL VQKSKILRDW RNPNNVEDIN QIKMMEDHLI ESLNGLRSRK NQLTIEQQIR 180 ERESEVGLSI SMKLFMHFQL *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012458186.1	1e-132	PREDICTED: MADS-box transcription factor 18-like
TrEMBL	A0A0D2V3E2	1e-142	A0A0D2V3E2_GOSRA; Uncharacterized protein
STRING	Gorai.012G090200.1	1e-143	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7330	18	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	2e-28	AGAMOUS-like 65

Link Out ? help Back to Top
Phytozome	Gorai.012G090200.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]