PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.012G084600.1 | ||||||||
Common Name | B456_012G084600, LOC105780235 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | TCP | ||||||||
Protein Properties | Length: 301aa MW: 31763.5 Da PI: 9.1033 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 124.9 | 9e-39 | 58 | 140 | 2 | 83 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas 83 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tg+++++as+ a+ s+s+ + Gorai.012G084600.1 58 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASALaAAGGSVSQPG 140 789******************************************************************88843333333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.1E-31 | 63 | 153 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.016 | 64 | 118 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MDPKGAKQPP EEVANLLSLP PQPQQQQPQN MGENKAAEIK DFQIVVADKG EGKKQQLAPK 60 RSSNKDRHTK VEGRGRRIRM PALCAARIFQ LTRELGHKSD GETIQWLLQQ AEPSIIAATG 120 SGTIPASALA AAGGSVSQPG ASLSAGLHQK MEDLGGSSIG SGSSRTSWTM VGGNLGRPHH 180 VATGLWPPVS GFGFQSSSGP STTNLGSDSS NYLQKLGFPG FDLPASNMGQ ISFTSILGGA 240 NQQLPGLELG LSQDGHIGVL NPHALNQIYQ QMEQARMQPQ HQHQHQQQPP AKDDSQGSGQ 300 * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00636 | PBM | Transfer from Glyma.19G095300 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012459893.1 | 0.0 | PREDICTED: transcription factor TCP20-like | ||||
Swissprot | Q9LSD5 | 2e-83 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A0D2TKZ1 | 0.0 | A0A0D2TKZ1_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.012G084600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4050 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 4e-74 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.012G084600.1 |
Entrez Gene | 105780235 |