PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G081200.3

Common Name

B456_012G081200, LOC105779789

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 250aa MW: 27595.8 Da PI: 6.5001

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G081200.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	28	4.8e-09	95	137	8	50
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 rr NReA r++R++Kka ++ Lee+vk+L N++L +l+ Gorai.012G081200.3 95 RRSLGNREAVRKYREKKKAHTAYLEEEVKKLRLLNQQLVRKLQ 137 78889*********************************98887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.5E-6	91	155	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.3E-10	93	154	No hit	No description
SuperFamily	SSF57959	1.56E-7	94	138	No hit	No description
Pfam	PF07716	2.7E-12	95	137	IPR004827	Basic-leucine zipper domain
CDD	cd14686	3.17E-11	100	146	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MKENMEDGEI ELSDHVLLSN TAPSTNFQDS TSVDLIIDEY LKNTRTCSHT HTCNPPGPDV 60 AHSHTCYHTH TQLLTSEDDD YHNNKASSGL NLKPRRSLGN REAVRKYREK KKAHTAYLEE 120 EVKKLRLLNQ QLVRKLQGQT ILEAEVLRLR SLLVGIRAKV DSELGVFPFH KQCANATILK 180 EGDCGVQSIG DTISLQCQTD LPCFHPHPGS LSSHASIGGS EKVSISLEGN CQPATVNCQA 240 NEHNSDDQC*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012459164.1	0.0	PREDICTED: uncharacterized protein LOC105779789
Refseq	XP_012459165.1	0.0	PREDICTED: uncharacterized protein LOC105779789
Refseq	XP_012459166.1	0.0	PREDICTED: uncharacterized protein LOC105779789
TrEMBL	A0A0D2TKM6	0.0	A0A0D2TKM6_GOSRA; Uncharacterized protein
STRING	Gorai.012G081200.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35040.1	2e-51	bZIP family protein

Link Out ? help Back to Top
Phytozome	Gorai.012G081200.3
Entrez Gene	105779789

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]