PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G081200.1

Common Name

B456_012G081200

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 258aa MW: 28482.8 Da PI: 6.3818

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G081200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	27.9	5e-09	103	145	8	50
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 rr NReA r++R++Kka ++ Lee+vk+L N++L +l+ Gorai.012G081200.1 103 RRSLGNREAVRKYREKKKAHTAYLEEEVKKLRLLNQQLVRKLQ 145 78889*********************************98887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.5E-6	99	163	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.4E-10	101	162	No hit	No description
SuperFamily	SSF57959	1.63E-7	102	146	No hit	No description
Pfam	PF07716	2.9E-12	103	145	IPR004827	Basic-leucine zipper domain
CDD	cd14686	1.48E-11	108	154	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MLYSYCLSGQ ENMEDGEIEL SDHVLLSNTA PSTNFQDSTS VDLIIDEYLK NTRTCSHTHT 60 CNPPGPDVAH SHTCYHTHTQ LLTSEDDDYH NNKASSGLNL KPRRSLGNRE AVRKYREKKK 120 AHTAYLEEEV KKLRLLNQQL VRKLQGQTIL EAEVLRLRSL LVGIRAKVDS ELGVFPFHKQ 180 CANATILKEG DCGVQSIGDT ISLQCQTDLP CFHPHPGSLS SHASIGGSEK VSISLEGNCQ 240 PATVNCQANE HNSDDQC*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016738788.1	0.0	PREDICTED: basic leucine zipper 24-like isoform X1
TrEMBL	A0A0D2RZM3	0.0	A0A0D2RZM3_GOSRA; Uncharacterized protein
STRING	Gorai.012G081200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2036	28	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35040.1	2e-51	bZIP family protein

Link Out ? help Back to Top
Phytozome	Gorai.012G081200.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]