PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.012G073400.1 | ||||||||
Common Name | B456_012G073400, LOC105779268 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 250aa MW: 28591.4 Da PI: 9.6571 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 131 | 9e-41 | 33 | 162 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeek..ewyfFskrdkkyatgkrknratksgyWkat 86 +p GfrF+P+d+el+ +yL k+++k+l+ + ikev +yk++P +L + +++++ + ewyfF++rd+k+++gkr+nra+ +g+Wka Gorai.012G073400.1 33 MPSGFRFKPRDDELI-FYLMCKARNKPLPP-TRIKEVPLYKYDPDTLTAisgNMSSNGTinEWYFFTSRDRKHPQGKRPNRAAGDGFWKAV 121 699************.9**********999.67**************85456444433345****************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +dk+v+s +g+l+glkktLv+ +g+ +k++kt+W+mhey l Gorai.012G073400.1 122 NSDKHVKS-NGKLIGLKKTLVYCRGKPSKAQKTNWIMHEYVL 162 ********.99*****************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.29E-46 | 30 | 187 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.929 | 33 | 187 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-21 | 34 | 162 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MSINKSAAME EDGNQELMVR MKEAEDEAYL KSMPSGFRFK PRDDELIFYL MCKARNKPLP 60 PTRIKEVPLY KYDPDTLTAI SGNMSSNGTI NEWYFFTSRD RKHPQGKRPN RAAGDGFWKA 120 VNSDKHVKSN GKLIGLKKTL VYCRGKPSKA QKTNWIMHEY VLSDPPQTTH KNDHQLDGWA 180 LCRVYNRKPQ APKVPEKSSP QNFGSNNLNI QNQIQEQSAL QNFVTEDLNF SESDKFLLYA 240 NFGTIIYSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-44 | 18 | 188 | 3 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stem, flowers, and leaves. {ECO:0000269|PubMed:29760199}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269|PubMed:29760199}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269|PubMed:29760199}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012458487.1 | 0.0 | PREDICTED: NAC domain-containing protein 68-like | ||||
Swissprot | K4BWV2 | 1e-46 | NAP1_SOLLC; NAC domain-containing protein 1 | ||||
TrEMBL | A0A0D2TK12 | 0.0 | A0A0D2TK12_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.012G073400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM24817 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77450.1 | 4e-47 | NAC domain containing protein 32 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.012G073400.1 |
Entrez Gene | 105779268 |
Publications ? help Back to Top | |||
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