PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G056800.1

Common Name

B456_012G056800, LOC105781064

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 555aa MW: 60218.6 Da PI: 5.8312

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G056800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.3	4.2e-30	234	293	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+aed +++++tYeg+Hnh+ Gorai.012G056800.1 234 MNDGCQWRKYGQKISKGNPCPRAYYRCTVAsGCPVRKQVQRCAEDMSILITTYEGNHNHP 293 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.7E-32	219	295	IPR003657	WRKY domain
SuperFamily	SSF118290	4.71E-27	227	295	IPR003657	WRKY domain
PROSITE profile	PS50811	29.367	229	295	IPR003657	WRKY domain
SMART	SM00774	3.0E-36	234	294	IPR003657	WRKY domain
Pfam	PF03106	1.8E-26	235	293	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006952	Biological Process	defense response
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 555 aa Download sequence Send to blast
MEVLLMKMPT TDADIAQAIA CHQEDCSPEA KKTENRRKLH ENADLNSSSP SHEDLVDSKE 60 EDELESAKAE MGEVMEENER LKKMLEKIQE NYKSLQLSFF EILQQGAVKK SKCSSISSDH 120 NDEPVVLEPE LVSLSLGRTT PMESVKDEKT TSSIKSKDDP EIKAGLTLGL DSKFQLSSPQ 180 KSSEDQVKED DGAAETWPPN KIQKTTSRNG DEDQQNHVKR ARVSVRARCD APTMNDGCQW 240 RKYGQKISKG NPCPRAYYRC TVASGCPVRK QVQRCAEDMS ILITTYEGNH NHPLPVSATA 300 MASTTSAAAS MMLSGSSTSQ PGLNGLNFSH HDNSTTRQFY LSNSTSSSLS PTITLDVTSS 360 PSHSPLSSSN YFNSFPTSFP RFPPSLNFSS SESNILPAVW GNGYPGYGAV PYYQTQPGNS 420 ILGNESQNQI YQSLPGNNQQ GGASQQSLTE TLTKVITSDP SFRSVIAAAI SSVVCNSAKS 480 EDQTDQKAQH FGQKLMQAIV SQNEKGQSSC SSSYFNGLAS SSSQTGSSLL QSSLPFSILN 540 SAFKPASDDK GLKN*

Sequence ? help Back to Top

Protein Sequence Length: 555 aa Download sequence Send to blast

MEVLLMKMPT TDADIAQAIA CHQEDCSPEA KKTENRRKLH ENADLNSSSP SHEDLVDSKE  60
EDELESAKAE MGEVMEENER LKKMLEKIQE NYKSLQLSFF EILQQGAVKK SKCSSISSDH  120
NDEPVVLEPE LVSLSLGRTT PMESVKDEKT TSSIKSKDDP EIKAGLTLGL DSKFQLSSPQ  180
KSSEDQVKED DGAAETWPPN KIQKTTSRNG DEDQQNHVKR ARVSVRARCD APTMNDGCQW  240
RKYGQKISKG NPCPRAYYRC TVASGCPVRK QVQRCAEDMS ILITTYEGNH NHPLPVSATA  300
MASTTSAAAS MMLSGSSTSQ PGLNGLNFSH HDNSTTRQFY LSNSTSSSLS PTITLDVTSS  360
PSHSPLSSSN YFNSFPTSFP RFPPSLNFSS SESNILPAVW GNGYPGYGAV PYYQTQPGNS  420
ILGNESQNQI YQSLPGNNQQ GGASQQSLTE TLTKVITSDP SFRSVIAAAI SSVVCNSAKS  480
EDQTDQKAQH FGQKLMQAIV SQNEKGQSSC SSSYFNGLAS SSSQTGSSLL QSSLPFSILN  540
SAFKPASDDK GLKN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-20	221	295	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012461090.1	0.0	PREDICTED: probable WRKY transcription factor 72 isoform X1
Swissprot	Q9LXG8	1e-118	WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBL	A0A0D2VVV9	0.0	A0A0D2VVV9_GOSRA; Uncharacterized protein
STRING	Gorai.012G056800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2959	28	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	3e-75	WRKY DNA-binding protein 72

Link Out ? help Back to Top
Phytozome	Gorai.012G056800.1
Entrez Gene	105781064

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]