PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G055400.1
Common NameB456_012G055400
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 258aa    MW: 29471.3 Da    PI: 9.7806
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G055400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.22.5e-1786138456
                         -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         + +++ eq+++Le+ Fe+ +++  +++ +LAk lgL+ rq+ +WFqNrR ++k
  Gorai.012G055400.1  86 KKRLKLEQVKALEKSFESGNKLEPQRKLQLAKALGLKPRQIAIWFQNRRVRWK 138
                         4557889*********************************************9 PP
2HD-ZIP_I/II122.91.5e-3984174191
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         ekk+rl+ eqvk+LE+sFe+ +kLep+rK +la++Lgl+prq+a+WFqnrR R+ktkqlEkdy++Lk++++alk++ ++L++++++L +el
  Gorai.012G055400.1  84 EKKKRLKLEQVKALEKSFESGNKLEPQRKLQLAKALGLKPRQIAIWFQNRRVRWKTKQLEKDYDVLKKQCEALKADADALQAQNKKLSAEL 174
                         69*************************************************************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.13E-1877142IPR009057Homeodomain-like
PROSITE profilePS5007116.45580140IPR001356Homeobox domain
SMARTSM003893.8E-1683144IPR001356Homeobox domain
CDDcd000869.13E-1585141No hitNo description
PfamPF000461.2E-1486138IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-1887148IPR009057Homeodomain-like
PRINTSPR000313.1E-5111120IPR000047Helix-turn-helix motif
PROSITE patternPS000270115138IPR017970Homeobox, conserved site
PRINTSPR000313.1E-5120136IPR000047Helix-turn-helix motif
PfamPF021839.5E-14140180IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MILYNVARLS IVYTVDDDHI SILEQKVAVF WLTLPRLFLL ILSSSCPMKI MVMIISFPLL  60
ALPNSSLVLT KFLWRMNDGS HVGEKKKRLK LEQVKALEKS FESGNKLEPQ RKLQLAKALG  120
LKPRQIAIWF QNRRVRWKTK QLEKDYDVLK KQCEALKADA DALQAQNKKL SAELLSLKTK  180
DTNEISIKDE VNEGSWSSKN LFSTSSTRPT SMVQLLQGST RPNLPCTKPD QVVQEEGFCH  240
LLNEVDEQQG FWPWGEQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132140RRVRWKTKQ
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed 3 day after germination (DAG) in first rosette leaf primordia around the veins in the apical part of the leaf and close to the midvein in the basal part of the leaf. At later stage, expressed in new forming veins, and veins and fascicular cambium of mature leaves. {ECO:0000269|PubMed:12644682}.
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:12644682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016666438.10.0PREDICTED: homeobox-leucine zipper protein HAT7-like
SwissprotQ8LAT02e-56ATB20_ARATH; Homeobox-leucine zipper protein ATHB-20
TrEMBLA0A0D2V2750.0A0A0D2V275_GOSRA; Uncharacterized protein
STRINGGorai.012G055400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2842233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01220.11e-52homeobox protein 20
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]