PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G054800.1

Common Name

B456_012G054800

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 333aa MW: 38254.3 Da PI: 7.5899

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G054800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.8	1.7e-52	11	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 + pGfrFhPtdeelv +yLk+k+++k+l++ + i+++diyk+ePwdLpk ++++ekewyf+++rd+ky+++ r+nr+t+ g+Wkatg+d++ Gorai.012G054800.1 11 MLPGFRFHPTDEELVEFYLKNKIQQKSLPI-QLITQLDIYKYEPWDLPKLAASGEKEWYFYCPRDRKYRNSARPNRVTRGGFWKATGTDRP 100 579*************************.89***********8888899******************************** PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++s+ ++ +glkk+Lvfy+gra kg ktdW+mhe+rl Gorai.012G054800.1 101 IYSSdATKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 138 856667**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.89E-57	9	171	IPR003441	NAC domain
PROSITE profile	PS51005	55.858	11	171	IPR003441	NAC domain
Pfam	PF02365	3.1E-26	13	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MDDVEKVEDV MLPGFRFHPT DEELVEFYLK NKIQQKSLPI QLITQLDIYK YEPWDLPKLA 60 ASGEKEWYFY CPRDRKYRNS ARPNRVTRGG FWKATGTDRP IYSSDATKCI GLKKSLVFYR 120 GRAAKGIKTD WMMHEFRLPS LSDKTLSANV MILIRSLISN DSWAICKIFR KTNCMAQRAL 180 SHTSIPSDIP HHYGPFNHFN EVQHAQQWTT SPLPVPNGDL HNNSMFLQCT VDTSSVVLSP 240 DATMIADDVR NNSESIDFKG KQQSFNGFSI RLPQDMEGTR NDDGDWRSIP LMGFPFSLSP 300 NVLDSWKPNL PWDTSLYPTE MSTTYSTDRY HT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-51	13	173	17	170	Stress-induced transcription factor NAC1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012458499.1	0.0	PREDICTED: putative NAC domain-containing protein 94
Swissprot	Q9FIW5	4e-96	NAC94_ARATH; Putative NAC domain-containing protein 94
TrEMBL	A0A0D2TJ27	0.0	A0A0D2TJ27_GOSRA; Uncharacterized protein
STRING	Gorai.012G054800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM306	28	200

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39820.1	2e-98	NAC domain containing protein 94

Link Out ? help Back to Top
Phytozome	Gorai.012G054800.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]