PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G054300.1
Common NameB456_012G054300
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ZF-HD
Protein Properties Length: 338aa    MW: 36326.9 Da    PI: 8.327
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G054300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer110.77.9e-3560115458
         ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                         ++YkeClkNhAaslGgha+DGCgEfmps++++ +++++lkCaACgCHRnFHRre++
  Gorai.012G054300.1  60 ITYKECLKNHAASLGGHALDGCGEFMPSPTATpTDPTSLKCAACGCHRNFHRREPD 115
                         79******************************9********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257748.0E-1841113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047704.2E-2960114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.1E-3261113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.3362113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.81E-20189259IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-30192260IPR009057Homeodomain-like
TIGRFAMsTIGR015659.3E-27198255IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MDIALASTAP KSPEAEPEPE PVTETPTRIQ PTKPVSFTNG VLKRHKPHHH HHYQAPPIVI  60
TYKECLKNHA ASLGGHALDG CGEFMPSPTA TPTDPTSLKC AACGCHRNFH RREPDDPPPT  120
TATPTIEYQP HHRHHPPPPA TAGQPNRSPN SASPPPISSS YYPSAPHMLL ALSGGLTNSH  180
LPAGGLTPNT ANLGSNSKKR FRTKFTQYQK DKMLEFAEKI GWKIQKRDEE DIQEFCREVG  240
VDRGVLKVWM HNNKNTFGKK DQANGGSSTR DGIGNGNGNG NGNGNGNGNG NGNGNGSVRF  300
NHEEHNNSNN NGQNLNHHFE TDSVAHVGTN GCSSSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-221972561675ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.31460.0flower| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO488114540.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5276781e-127HQ527678.1 Gossypium herbaceum clone NBRI_E_EYT27PB03GDSA6 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012459733.11e-168PREDICTED: zinc-finger homeodomain protein 9-like isoform X4
SwissprotQ9LXG04e-79ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A0D2V2990.0A0A0D2V299_GOSRA; Uncharacterized protein
STRINGGorai.012G054300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22202575
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.11e-64homeobox protein 34
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]