PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G051500.3
Common NameB456_012G051500
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 447aa    MW: 48595.1 Da    PI: 6.6801
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G051500.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.23e-32227284260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         +DgynWrKYGqK++kg e+prsYY+Ct+ +Cpvkkkversa d++++ei+Y+g Hnhek
  Gorai.012G051500.3 227 EDGYNWRKYGQKPIKGCEYPRSYYKCTYLNCPVKKKVERSA-DGEITEIIYKGAHNHEK 284
                         8****************************************.***************85 PP
2WRKY35.32.4e-11400421122
                         ---SS-EEEEEEE--TT-SS-E CS
                WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                         ldDgy+WrKYGqK+vkg+++pr
  Gorai.012G051500.3 400 LDDGYRWRKYGQKVVKGNPHPR 421
                         59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.56221285IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.5E-29223286IPR003657WRKY domain
SuperFamilySSF1182901.7E-25225285IPR003657WRKY domain
SMARTSM007741.2E-36226284IPR003657WRKY domain
PfamPF031065.1E-25227283IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-13385422IPR003657WRKY domain
SuperFamilySSF1182906.28E-10392422IPR003657WRKY domain
PROSITE profilePS5081115.663395421IPR003657WRKY domain
SMARTSM007748.6E-6400434IPR003657WRKY domain
PfamPF031062.2E-7401422IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MAEKRTRSKL SAPTRPSITL PPKPAMDGLF SSGLGLSPGP MTLVSSFFSD LDSTENRSFS  60
QLLASAMTSP GARLPHASMD GSFMEVGFKD GGEKSPGFKH NRPLNFDSPL FTAPTGLTPS  120
GLLNSPSFFC LSPQSPFGIS HRQALAQVTA QAALAQSQVH PQTEYQALTV SAPSESLIRH  180
PSFTPEETSQ LMPPLASEPQ SSAIEYSEAS QSDRKNQLPI AVDKPAEDGY NWRKYGQKPI  240
KGCEYPRSYY KCTYLNCPVK KKVERSADGE ITEIIYKGAH NHEKPQPNKQ AKGGSDGNAN  300
SQANPEFGSQ VAALNSNKLS ETMSSHSILG KTSESTQAAE LPGSSDSEEG CDEESREERD  360
DDEPNLKRRN TAPEAAVVLS HKTVTEPKII VQTRSEVDLL DDGYRWRKYG QKVVKGNPHP  420
RYNGLSIYMF IYGSNNGVLA IVQSFE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-162282851674WRKY transcription factor 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0310760.0KF031076.1 Gossypium hirsutum WRKY transcription factor 18 (WRKY18) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012459729.10.0PREDICTED: probable WRKY transcription factor 3
SwissprotQ9XI901e-112WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A0D2RY300.0A0A0D2RY30_GOSRA; Uncharacterized protein
STRINGGorai.012G051500.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.18e-92WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]