PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G051500.2
Common NameB456_012G051500, LOC105780139
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 326aa    MW: 36072.9 Da    PI: 8.1318
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G051500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.81.9e-323693260
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
                        +DgynWrKYGqK++kg e+prsYY+Ct+ +Cpvkkkversa d++++ei+Y+g Hnhek
  Gorai.012G051500.2 36 EDGYNWRKYGQKPIKGCEYPRSYYKCTYLNCPVKKKVERSA-DGEITEIIYKGAHNHEK 93
                        8****************************************.***************85 PP
2WRKY108.82.5e-34209267159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+vers++dpk+v++tYeg+Hnh+
  Gorai.012G051500.2 209 LDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERSSTDPKAVITTYEGKHNHD 267
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.563094IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.7E-293295IPR003657WRKY domain
SuperFamilySSF1182909.94E-263494IPR003657WRKY domain
SMARTSM007741.2E-363593IPR003657WRKY domain
PfamPF031063.2E-253692IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.7E-38194269IPR003657WRKY domain
SuperFamilySSF1182903.92E-30201269IPR003657WRKY domain
PROSITE profilePS5081139.249204269IPR003657WRKY domain
SMARTSM007744.0E-40209268IPR003657WRKY domain
PfamPF031068.8E-27210267IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MPPLASEPQS SAIEYSEASQ SDRKNQLPIA VDKPAEDGYN WRKYGQKPIK GCEYPRSYYK  60
CTYLNCPVKK KVERSADGEI TEIIYKGAHN HEKPQPNKQA KGGSDGNANS QANPEFGSQV  120
AALNSNKLSE TMSSHSILGK TSESTQAAEL PGSSDSEEGC DEESREERDD DEPNLKRRNT  180
APEAAVVLSH KTVTEPKIIV QTRSEVDLLD DGYRWRKYGQ KVVKGNPHPR SYYKCTSAGC  240
NVRKHVERSS TDPKAVITTY EGKHNHDVPA ARNSSHNMVN NSLLQTKPHK VVAENQNHSL  300
LKAMDFGNNG QGPAVLRLKE EQIRV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-4136270878Probable WRKY transcription factor 4
2lex_A2e-4136270878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0310760.0KF031076.1 Gossypium hirsutum WRKY transcription factor 18 (WRKY18) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012459729.10.0PREDICTED: probable WRKY transcription factor 3
SwissprotQ9ZQ701e-105WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A0D2V2240.0A0A0D2V224_GOSRA; Uncharacterized protein
TrEMBLA0A0D2VVQ20.0A0A0D2VVQ2_GOSRA; Uncharacterized protein
STRINGGorai.012G051500.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-100WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]