PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G044200.1
Common NameB456_012G044200, LOC105780637
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 395aa    MW: 45097.3 Da    PI: 5.7348
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G044200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.41.5e-35141042101
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+ye+++d+ +++l+swse+g sfvv+++ +f++++Lp+yFkh+nf+SFvRQLn+YgF+k++ ++         weF++++F +g+k+
  Gorai.012G044200.1  14 FLTKTYEMVDDPVTDSLVSWSETGYSFVVWNPPDFSRDLLPRYFKHNNFSSFVRQLNTYGFRKIDPDQ---------WEFANEEFIRGQKH 95 
                         9****************************************************************999.........************** PP

                         XXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkk 101
                         ll++i r+k
  Gorai.012G044200.1  96 LLKNIYRRK 104
                         *******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.0E-39898IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.5E-3510103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-6310103IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.2E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.3E-211437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.3E-215264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.3E-216577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MEGSQGSCNG PPPFLTKTYE MVDDPVTDSL VSWSETGYSF VVWNPPDFSR DLLPRYFKHN  60
NFSSFVRQLN TYGFRKIDPD QWEFANEEFI RGQKHLLKNI YRRKPIHSHS LNRQGSSSVP  120
LTEKEKKEFE QVIKMLSDDK NRLQLQLQGH QKENEEYRCQ VRLLSERFRN MEDRQRRVMV  180
SLARIIDKPH VLSQFHGKKR KLLNCNDFND ECNIQDLHSL ASLNANMGLD LKQIEELESS  240
IRCWETLFLE IGETIGEEVR DFGTSLRPSP VVVTEIQTSS GDYDMDGELY SPSSHHCSPY  300
STDINSSPEL VAPAYRPIHT PSFHHVVNLN PKPPGIGLNS QHASPLETDQ ASKNQAEAVA  360
TGYTVPGSVN DGFWERFLTE VPDTSSYAQE IQSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-26310319129Heat shock factor protein 1
5d5v_B5e-26310319129Heat shock factor protein 1
5d5v_D5e-26310319129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0674180.0KR067418.1 Gossypium hirsutum HSF37 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012460526.10.0PREDICTED: heat stress transcription factor A-4b-like
TrEMBLA0A0D2VVD00.0A0A0D2VVD0_GOSRA; Uncharacterized protein
STRINGGorai.012G044200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM167341012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.11e-66HSF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]