PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.012G042600.9 | ||||||||
Common Name | B456_012G042600, LOC105780473 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 235aa MW: 26991.7 Da PI: 9.7992 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.4 | 1.4e-31 | 24 | 73 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+ Gorai.012G042600.9 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 73 79***********************************************8 PP | |||||||
2 | K-box | 107.2 | 1.9e-35 | 93 | 188 | 5 | 100 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 + s++ea+ + +qqe++kL+++i+ q+ +Rh+lGe L+sL++keL++Le +Lek++ +iRskKnell+++i +qk+e elq++n++Lr Gorai.012G042600.9 93 TPGSVAEANIQFYQQEATKLRRQIRDVQNMNRHILGEALSSLTFKELKNLEGRLEKGICRIRSKKNELLFAEIGFMQKREVELQNDNMYLR 183 445699************************************************************************************* PP K-box 96 kklee 100 +k++e Gorai.012G042600.9 184 AKIAE 188 **986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.1E-42 | 16 | 75 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 34.132 | 16 | 76 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.57E-45 | 17 | 90 | No hit | No description |
SuperFamily | SSF55455 | 5.89E-33 | 17 | 88 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-33 | 18 | 38 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 18 | 72 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.5E-27 | 25 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-33 | 38 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-33 | 53 | 74 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 7.5E-26 | 101 | 186 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.713 | 102 | 192 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0090376 | Biological Process | seed trichome differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MEFPNLDPES SSQKKMGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL 60 IVFSSRGRLY EYANNSVRAT IERYKKACSD ATTPGSVAEA NIQFYQQEAT KLRRQIRDVQ 120 NMNRHILGEA LSSLTFKELK NLEGRLEKGI CRIRSKKNEL LFAEIGFMQK REVELQNDNM 180 YLRAKIAENE RAQQQSNQLM QAASSYNRNF LPVNLLEPSN NDYSNQDQTP LQLV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 6e-21 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 6e-21 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_R | 6e-21 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_S | 6e-21 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
5f28_A | 8e-21 | 16 | 84 | 1 | 69 | MEF2C |
5f28_B | 8e-21 | 16 | 84 | 1 | 69 | MEF2C |
5f28_C | 8e-21 | 16 | 84 | 1 | 69 | MEF2C |
5f28_D | 8e-21 | 16 | 84 | 1 | 69 | MEF2C |
6byy_A | 8e-21 | 16 | 84 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 8e-21 | 16 | 84 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 8e-21 | 16 | 84 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 8e-21 | 16 | 84 | 1 | 69 | MEF2 CHIMERA |
6c9l_A | 6e-21 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_B | 6e-21 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_C | 6e-21 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_D | 6e-21 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_E | 6e-21 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_F | 6e-21 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|PubMed:11414613}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF202091 | 0.0 | EF202091.1 Gossypium hirsutum MADS-box protein MADS7 mRNA, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001314631.1 | 1e-172 | agamous-like MADS-box protein AGL1 | ||||
Refseq | XP_012460287.1 | 1e-172 | PREDICTED: agamous-like MADS-box protein AGL1 isoform X1 | ||||
Swissprot | Q93XH4 | 1e-124 | MADS1_VITVI; Agamous-like MADS-box protein MADS1 | ||||
TrEMBL | A0A0D2RX17 | 1e-171 | A0A0D2RX17_GOSRA; Uncharacterized protein | ||||
TrEMBL | A2ID27 | 1e-171 | A2ID27_GOSHI; MADS-box protein MADS7 | ||||
STRING | Gorai.012G042600.1 | 1e-169 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58780.1 | 1e-125 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.012G042600.9 |
Entrez Gene | 105780473 |
Publications ? help Back to Top | |||
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