PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G042600.8
Common NameB456_012G042600
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 174aa    MW: 19951.2 Da    PI: 10.4348
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G042600.8genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.18.3e-322473150
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  Gorai.012G042600.8 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 73
                        79***********************************************8 PP
2K-box72.71e-2493161573
               K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnell 73 
                         +  s++ea+ + +qqe++kL+++i+  q+ +Rh+lGe L+sL++keL++Le +Lek++ +iRskK  +l
  Gorai.012G042600.8  93 TPGSVAEANIQFYQQEATKLRRQIRDVQNMNRHILGEALSSLTFKELKNLEGRLEKGICRIRSKKVFVL 161
                         445699***********************************************************7666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-421675IPR002100Transcription factor, MADS-box
PROSITE profilePS5006634.1321676IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-331789IPR002100Transcription factor, MADS-box
CDDcd002653.73E-441790No hitNo description
PRINTSPR004042.0E-331838IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001872IPR002100Transcription factor, MADS-box
PfamPF003195.0E-272572IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-333853IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-335374IPR002100Transcription factor, MADS-box
PfamPF014865.2E-18101158IPR002487Transcription factor, K-box
PROSITE profilePS512979.985102173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MEFPNLDPES SSQKKMGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL  60
IVFSSRGRLY EYANNSVRAT IERYKKACSD ATTPGSVAEA NIQFYQQEAT KLRRQIRDVQ  120
NMNRHILGEA LSSLTFKELK NLEGRLEKGI CRIRSKKVFV LVYIKIFHPF LLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-211684169Myocyte-specific enhancer factor 2B
1tqe_Q2e-211684169Myocyte-specific enhancer factor 2B
1tqe_R2e-211684169Myocyte-specific enhancer factor 2B
1tqe_S2e-211684169Myocyte-specific enhancer factor 2B
6c9l_A2e-211684169Myocyte-specific enhancer factor 2B
6c9l_B2e-211684169Myocyte-specific enhancer factor 2B
6c9l_C2e-211684169Myocyte-specific enhancer factor 2B
6c9l_D2e-211684169Myocyte-specific enhancer factor 2B
6c9l_E2e-211684169Myocyte-specific enhancer factor 2B
6c9l_F2e-211684169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Interacts genetically with TT16/AGL32 in a partially antagonistic manner during flower development. Is essential for the coordination of cell divisions in ovule, seed coat development and endosperm formation (PubMed:27776173). {ECO:0000269|PubMed:27776173}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF2020910.0EF202091.1 Gossypium hirsutum MADS-box protein MADS7 mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016751324.11e-114PREDICTED: agamous-like MADS-box protein AGL1 isoform X1
RefseqXP_016751326.11e-114PREDICTED: agamous-like MADS-box protein AGL1 isoform X3
SwissprotP293811e-90AGL1_ARATH; Agamous-like MADS-box protein AGL1
TrEMBLA0A0D2RX191e-124A0A0D2RX19_GOSRA; Uncharacterized protein
STRINGGorai.012G042600.11e-114(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.16e-93MIKC_MADS family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Matalon O, et al.
    Dephosphorylation of the adaptor LAT and phospholipase C-γ by SHP-1 inhibits natural killer cell cytotoxicity.
    Sci Signal, 2016. 9(429): p. ra54
    [PMID:27221712]
  3. Ehlers K, et al.
    The MADS Box Genes ABS, SHP1, and SHP2 Are Essential for the Coordination of Cell Divisions in Ovule and Seed Coat Development and for Endosperm Formation in Arabidopsis thaliana.
    PLoS ONE, 2016. 11(10): p. e0165075
    [PMID:27776173]